GitHub - TJUAnt/EasyHPS: EasyHPS is a multilevel hybrid parallel runtime system for dynamic programming. EasyHPS system encapsulates details of parallelization implementation, such as task scheduling and message passing, and provide easy API for users to reduce the complexity of parallel programming.

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EasyHPS is a multilevel hybrid parallel runtime system for dynamic programming. EasyHPS system encapsulates details of parallelization implementation, such as task scheduling and message passing, and provide easy API for users to reduce the complexity of parallel programming.

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Name		Name	Last commit message	Last commit date
Latest commit History 3 Commits
Bin		Bin
EasyHPS_src		EasyHPS_src
data		data
yeast		yeast
Alignment.cpp		Alignment.cpp
Alignment.h		Alignment.h
Config.mk		Config.mk
EasyHPS.mk		EasyHPS.mk
EasyHPS.pdf		EasyHPS.pdf
FastaLib.cpp		FastaLib.cpp
FastaLib.h		FastaLib.h
Makefile		Makefile
README		README
ScoringTable.cpp		ScoringTable.cpp
ScoringTable.h		ScoringTable.h
SmithWaterman.cpp		SmithWaterman.cpp
cache.cpp		cache.cpp
cache.h		cache.h
run.sh		run.sh
run_log		run_log

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EasyHPS is a multilevel hybrid parallel runtime system for dynamic
programming. EasyHPS system encapsulates details of parallelization
implementation, such as task scheduling and message passing, and
provide easy API for users to reduce the complexity of parallel
programming.

This project is implemented by C/C++, Pthread and MPI. In order to run this
project or use this project, the environment should have the corresponding
compliers and libraries.

This README is just a fast "quick start" document. You can find more details
in the EasyHPS.pdf

It is as simple as:

    % make

We have implemented a dynamic algorithm as a demo -- SmithWaterman General 
Gap. To run this demo, just type:
   
    % ./run.sh