GitHub - Tsinghua-gongjing/zebrafish_structure: Codes for project zebrafish structure data analysis.

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Name		Name	Last commit message	Last commit date
Latest commit History 82 Commits
RBP_binding_site_prediction		RBP_binding_site_prediction
_old		_old
data		data
dynamic_region		dynamic_region
preprocessing		preprocessing
results		results
F1.all_sample_mean_reactivity_plot.py		F1.all_sample_mean_reactivity_plot.py
F1.atcg_icshape_vs_transcriptome.pie.py		F1.atcg_icshape_vs_transcriptome.pie.py
F1.transcript_with_structure_info_number_calc.py		F1.transcript_with_structure_info_number_calc.py
F1.transcript_with_structure_info_number_plot.py		F1.transcript_with_structure_info_number_plot.py
F2.atcg_dynamic_pie.py		F2.atcg_dynamic_pie.py
F2.dynamic_density_in_element.py		F2.dynamic_density_in_element.py
F2.dynamic_region_enrichment_abs.R		F2.dynamic_region_enrichment_abs.R
F2.merge_peaks.sh		F2.merge_peaks.sh
F2.motif_scatter_heatmap.py		F2.motif_scatter_heatmap.py
F2.multi_peaks_UpSet_extract.py		F2.multi_peaks_UpSet_extract.py
F2.multi_peaks_UpSet_plot.R		F2.multi_peaks_UpSet_plot.R
F2.upset_venn_file_ratio.py		F2.upset_venn_file_ratio.py
F3.FS3.IPmass.scatter.py		F3.FS3.IPmass.scatter.py
F3.FS3.TE_comparison.TE_rep_correlation.py		F3.FS3.TE_comparison.TE_rep_correlation.py
F3.FS3.egg_1cell_RK33_gini_hist.py		F3.FS3.egg_1cell_RK33_gini_hist.py
F3.TE_diff_vs_gini_diff.py		F3.TE_diff_vs_gini_diff.py
F3.egg_1cell_RK33_gini_ratio_comparison.py		F3.egg_1cell_RK33_gini_ratio_comparison.py
F4.FS4.motif_scatter_heatmap.sphere_shield.py		F4.FS4.motif_scatter_heatmap.sphere_shield.py
F4.IPmass_elavla1_h4.py		F4.IPmass_elavla1_h4.py
F4.elavl1a_bind_pie.R		F4.elavl1a_bind_pie.R
F4.elavl1a_motif_shape_reactivity.sh		F4.elavl1a_motif_shape_reactivity.sh
F5.iclip_bind_h4_h6_structure_meta.set_overlap.sh		F5.iclip_bind_h4_h6_structure_meta.set_overlap.sh
F5.pie_more_less_structure_stable_decay.py		F5.pie_more_less_structure_stable_decay.py
F6C.F6D.cumulative_curve.py		F6C.F6D.cumulative_curve.py
FS1.FS3.RT_correlation_cumulation.py		FS1.FS3.RT_correlation_cumulation.py
FS1.RTcorr_calc_wrapper.py		FS1.RTcorr_calc_wrapper.py
FS1.RTcorr_plot.py		FS1.RTcorr_plot.py
FS1.all_sample_RPKM_correlation_DMSO_NAI_heatmap_plot.R		FS1.all_sample_RPKM_correlation_DMSO_NAI_heatmap_plot.R
FS1.all_sample_RPKM_correlation_calc.py		FS1.all_sample_RPKM_correlation_calc.py
FS1.atcg_stats_calc.py		FS1.atcg_stats_calc.py
FS1.atcg_stats_plot.py		FS1.atcg_stats_plot.py
FS2.gini_TE_ratio.py		FS2.gini_TE_ratio.py
FS2.motif_scatter_dreme_tomtom.way2345.py		FS2.motif_scatter_dreme_tomtom.way2345.py
FS3.gini_ratio_vs_TE_box.py		FS3.gini_ratio_vs_TE_box.py
FS3.motif_scatter_dreme_tomtom.egg_1cell.py		FS3.motif_scatter_dreme_tomtom.egg_1cell.py
FS4.F5.more_less_structure_4h_6h_rpkm.R		FS4.F5.more_less_structure_4h_6h_rpkm.R
FS4.elavl1a_elavl1b_rpkm.py		FS4.elavl1a_elavl1b_rpkm.py
FS4.elavl1a_motif_shape_reactivity.R		FS4.elavl1a_motif_shape_reactivity.R
FS4.iclip_bam_corr.py		FS4.iclip_bam_corr.py
FS4.iclip_bam_corr.sh		FS4.iclip_bam_corr.sh
FS4.iclip_compare_with_human.py		FS4.iclip_compare_with_human.py
FS4.iclip_peak_element_dist.py		FS4.iclip_peak_element_dist.py
README.md		README.md
bed_motif_structure_meta.py		bed_motif_structure_meta.py
datasets.py		datasets.py
gj.py		gj.py
gj.pyc		gj.pyc
run.err		run.err
run.out		run.out
venn_all.py		venn_all.py
venn_all.pyc		venn_all.pyc
venn_plot.py		venn_plot.py

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Hello world Codes for project zebrafish structure data analysis.

Tsinghua-gongjing/zebrafish_structure

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