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Personal Docker image useful for scientific computing

Based on Ubuntu 14.04 LTS. Dependencies not in Ubuntu repositories are kept in source tree for easier reproducibility (Ubuntu repository mirrors are widespread and expected to be available for the foreseeable future).

See Dockerfile for list of installed packages. See also bjodahimgbase

How to build the image

In principle the following steps are executed:

$ ./tools/03_download_base_python_packages.sh
$ ./tools/04_upload_base_to_repo.sh latest
$ ./tools/05_generate_base_Dockerfile.sh latest
$ ./tools/10_build_base_image.sh latest dummy_reg_user # push and tag and use below:
$ ./tools/20_download_python_packages.sh
$ ./tools/30_download_blobs.sh
$ ./tools/35_render_build_scripts.sh
$ ./tools/40_build_packages.sh
$ ./tools/60_upload_to_repo.sh latest
$ ./tools/70_generate_Dockerfile.sh latest
$ ./tools/80_build_image.sh latest dummy_reg_user
$ ./tools/85_test_image.sh latest dummy_reg_user
$ ./tools/90_build_dev_image.sh latest dummy_reg_user
$ ./tools/95_test_dev_image.sh latest dummy_reg_user

See deb-buildscripts/ for packages built by tools/40_build_packages.sh.

If tests pass in the last step the new Dockerfile is commited in git and pushed to bjodahimg-dockerfile which triggers a trusted build on docker hub:

If tagging a new release:

$ ssh repo@hera.physchem.kth.se 'rm public_html/bjodahimg/latest'
$ ./tools/70_generate_Dockerfile.sh vX.Y
$ ./tools/80_build_image.sh vX.Y dummy_reg_user
$ ssh repo@hera.physchem.kth.se 'mkdir public_html/bjodahimg/vX.YY; ln -s vX.YY public_html/latest'
$ cd bjodahimg-dockerfile
$ git commit -am "various updates for release vX.Y"
$ git tag -a vX.Y -m vX.Y
$ git push
$ git push --tags
$ cd ../
$ git commit -am "new release X.Y"
$ git push

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Personal base docker image based on Ubuntu 14.04, useful for scientific computing

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