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Gamgee

Project website: http://mauriciocarneiro.github.io/gamgee/

A C++ interface for key next generation sequencing file formats. This library provides an API for handilng SAM, BAM, CRAM, VCF, BCF, BED, intervals and interval_list files.

The implementation is currently imcomplete, but is under development. The APIs are free to change until we reach version 1.

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A C++ interface for HTSLIB (samtools/htslib)

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  • C++ 90.3%
  • C 5.3%
  • Python 4.4%