A set of programs to manipulate SAM/BAM/CRAM files, using HTSLIB

to install:

clone into a local directory (eg 'bambi')

cd bambi

autoreconf -i

configure --prefix=<place to install> --with-htslib=<directory containing a htslib release>

(eg configure --prefix=/usr/local/bambi --with-htslib=/usr/local/htslib/1.3)

make

make check (to run tests)