GitHub - mlandis/origamino: Phylogenetic method specialized to consider protein tertiary structure

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
.settings		.settings
.cproject		.cproject
.project		.project
.vimrc		.vimrc
2KSS.pdb		2KSS.pdb
3KP3.pdb		3KP3.pdb
4HHB (copy).pdb		4HHB (copy).pdb
4HHB.pdb		4HHB.pdb
Alignment.cpp		Alignment.cpp
Alignment.h		Alignment.h
Code.cpp		Code.cpp
Code.h		Code.h
CondLikes.cpp		CondLikes.cpp
CondLikes.h		CondLikes.h
ECMfreq.dat		ECMfreq.dat
ECMmatrix.dat		ECMmatrix.dat
ECMrest.dat.bak		ECMrest.dat.bak
ECMunrest.dat		ECMunrest.dat
MbBitfield.cpp		MbBitfield.cpp
MbBitfield.h		MbBitfield.h
MbEigensystem.cpp		MbEigensystem.cpp
MbEigensystem.h		MbEigensystem.h
MbMath.cpp		MbMath.cpp
MbMath.h		MbMath.h
MbMatrix.h		MbMatrix.h
MbRandom.cpp		MbRandom.cpp
MbRandom.h		MbRandom.h
MbTransitionMatrix.cpp		MbTransitionMatrix.cpp
MbTransitionMatrix.h		MbTransitionMatrix.h
Mcmc.cpp		Mcmc.cpp
Mcmc.h		Mcmc.h
Menu.cpp		Menu.cpp
Menu.h		Menu.h
ModelPath.cpp		ModelPath.cpp
ModelPath.h		ModelPath.h
ModelSeq.cpp		ModelSeq.cpp
ModelSeq.cpp.old2		ModelSeq.cpp.old2
ModelSeq.h		ModelSeq.h
Parm.cpp		Parm.cpp
Parm.h		Parm.h
Parm_context.cpp		Parm_context.cpp
Parm_context.h		Parm_context.h
Parm_freqs.cpp		Parm_freqs.cpp
Parm_freqs.h		Parm_freqs.h
Parm_kappa.cpp		Parm_kappa.cpp
Parm_kappa.h		Parm_kappa.h
Parm_omega.cpp		Parm_omega.cpp
Parm_omega.h		Parm_omega.h
Parm_pairwise.cpp		Parm_pairwise.cpp
Parm_pairwise.h		Parm_pairwise.h
Parm_scaling.cpp		Parm_scaling.cpp
Parm_scaling.h		Parm_scaling.h
Parm_solv.cpp		Parm_solv.cpp
Parm_solv.h		Parm_solv.h
Parm_tree.cpp		Parm_tree.cpp
Parm_tree.h		Parm_tree.h
Path.cpp		Path.cpp
Path.h		Path.h
README		README
Settings.cpp		Settings.cpp
Settings.h		Settings.h
TiProbs.cpp		TiProbs.cpp
TiProbs.h		TiProbs.h
Util.cpp.old		Util.cpp.old
bglobin.in		bglobin.in
bglobin.in.custom		bglobin.in.custom
bglobin.in~		bglobin.in~
bglobin.out.p		bglobin.out.p
bglobin.out.t		bglobin.out.t
bglobin.tree		bglobin.tree
ideas.txt		ideas.txt
main.cpp		main.cpp
origami rate matrix.ods		origami rate matrix.ods
origami_valgrind_062210.txt		origami_valgrind_062210.txt
origami_valgrind_062510.txt		origami_valgrind_062510.txt
q_and_r_sample.ods		q_and_r_sample.ods
q_and_r_sample.txt		q_and_r_sample.txt
settingslinux.ini		settingslinux.ini
settingsmac.ini		settingsmac.ini
solventaccessibility.txt		solventaccessibility.txt