Put the files or symlinks to them in source/tools/ManualExamples.

Open the makefile in that directory, and add arqsimucache arqsimujumps arqsimucpu to the TOOL_ROOTS variable.

Then compile with (replace file for either arqsimucache, arqsimujumps or arqsimucpu):

make dir obj-intel64/file.so

And run with (replace /bin/ls with any executable):

../../../pin -injection child -t obj-intel64/file.so -- /bin/ls

Every tool creates a file called file.out (for example, arqsimucache creates arqsimucache.out) in the working directory.

In case you need to debug, follow instructions in http://www.pintool.org/docs/45467/Pin/html/. You will probably use something like the following, to pause while you attach to the process using gdb:

../../../pin -pause_tool 10 -injection child -t obj-intel64/file.so -- /bin/ls