GitHub - pelinakan/Bam_Stats: Takes a BAM file and outputs read stats,insert size distribution, coverage and complexity plots

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Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
Bam_Stats.cpp		Bam_Stats.cpp
CMakeLists.txt		CMakeLists.txt
FileIterator.cpp		FileIterator.cpp
GenomicRegion.cpp		GenomicRegion.cpp
GetReadStats.h		GetReadStats.h
MapQ_stats.h		MapQ_stats.h
MappedRead.cpp		MappedRead.cpp
OptionParser.cpp		OptionParser.cpp
QualityScore.cpp		QualityScore.cpp
RNG.cpp		RNG.cpp
SAM.cpp		SAM.cpp
alglibinternal.cpp		alglibinternal.cpp
alglibinternal.h		alglibinternal.h
alglibmisc.cpp		alglibmisc.cpp
alglibmisc.h		alglibmisc.h
ap.cpp		ap.cpp
ap.h		ap.h
bam2mr.cpp		bam2mr.cpp
bisulfite_utils.cpp		bisulfite_utils.cpp
computeCoverage.h		computeCoverage.h
continued_fraction.cpp		continued_fraction.cpp
dataanalysis.cpp		dataanalysis.cpp
dataanalysis.h		dataanalysis.h
diffequations.cpp		diffequations.cpp
diffequations.h		diffequations.h
fasttransforms.cpp		fasttransforms.cpp
fasttransforms.h		fasttransforms.h
integration.cpp		integration.cpp
integration.h		integration.h
interpolation.cpp		interpolation.cpp
interpolation.h		interpolation.h
linalg.cpp		linalg.cpp
linalg.h		linalg.h
load_data_for_complexity.cpp		load_data_for_complexity.cpp
moment_sequence.cpp		moment_sequence.cpp
optimization.cpp		optimization.cpp
optimization.h		optimization.h
preseq.cpp		preseq.cpp
print_usage.h		print_usage.h
qaCompute.h		qaCompute.h
radix.h		radix.h
sim_utils.cpp		sim_utils.cpp
smithlab_os.cpp		smithlab_os.cpp
smithlab_utils.cpp		smithlab_utils.cpp
solvers.cpp		solvers.cpp
solvers.h		solvers.h
specialfunctions.cpp		specialfunctions.cpp
specialfunctions.h		specialfunctions.h
statistics.cpp		statistics.cpp
statistics.h		statistics.h
stdafx.h		stdafx.h