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liege_sp

Introduction

In this workspace found several sub-directories which contain GWAS data processing scriptrs and implementations for clustering algorithms.

Clustering Algorithms

  • CAST algorithms +# DBSCAN

Processing

  • .bed file to Clustering INPUT

Working pileline

  1. For each GWAS dataset( .bed ), split to obtain 23 separate files, one for each chromosome
  2. Use the script to convert a .bed to a .csv file compatible with the clustering algorithms
  3. Perform the cluster analysis on the generated output

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