GitHub - vlcc/basplice

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
2BWT-Builder.c		2BWT-Builder.c
2BWT-Interface.c		2BWT-Interface.c
2BWT-Interface.h		2BWT-Interface.h
2BWT-Sample.c		2BWT-Sample.c
BWT.c		BWT.c
BWT.h		BWT.h
BWTConstruct.c		BWTConstruct.c
BWTConstruct.h		BWTConstruct.h
BWTLoad.c		BWTLoad.c
BWTLoad.h		BWTLoad.h
CacheTest.c		CacheTest.c
DNACount.c		DNACount.c
DNACount.h		DNACount.h
FASTAToText.c		FASTAToText.c
HSP.c		HSP.c
HSP.h		HSP.h
HSPstatistic.c		HSPstatistic.c
HSPstatistic.h		HSPstatistic.h
Makefile		Makefile
MemManager.c		MemManager.c
MemManager.h		MemManager.h
MiscUtilities.c		MiscUtilities.c
MiscUtilities.h		MiscUtilities.h
QSufSort.c		QSufSort.c
QSufSort.h		QSufSort.h
README		README
SSETest.c		SSETest.c
SearchBWT.c		SearchBWT.c
Socket.c		Socket.c
Socket.h		Socket.h
TextConverter.c		TextConverter.c
TextConverter.h		TextConverter.h
Timing.c		Timing.c
Timing.h		Timing.h
TypeNLimit.h		TypeNLimit.h
bamlite.c		bamlite.c
bamlite.h		bamlite.h
bntseq.c		bntseq.c
bntseq.h		bntseq.h
bwaseqio.c		bwaseqio.c
bwt_array.c		bwt_array.c
bwt_array.h		bwt_array.h
bwtaln.c		bwtaln.c
bwtaln.h		bwtaln.h
bwtgap.c		bwtgap.c
bwtgap.h		bwtgap.h
bwtse.c		bwtse.c
bwtse.h		bwtse.h
cs2nt.c		cs2nt.c
dictionary.c		dictionary.c
dictionary.h		dictionary.h
iniparser.c		iniparser.c
iniparser.h		iniparser.h
inistrlib.c		inistrlib.c
inistrlib.h		inistrlib.h
karlin.c		karlin.c
karlin.h		karlin.h
kseq.h		kseq.h
kstring.c		kstring.c
kstring.h		kstring.h
main.c		main.c
main.h		main.h
r250.c		r250.c
r250.h		r250.h
stdaln.c		stdaln.c
stdaln.h		stdaln.h
utils.c		utils.c
utils.h		utils.h

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basplice 
The main propose to develop the software is finding splice junction in RNA.
My development is base on bwa, an open source mapping software which is widely 
used. But, many aglorithm should adjust to implement our intension, 
    like index style, and search method.