int main(int argc, char **argv) {
try {
desc.add_options()
("help,h",
"Print messages about any errors encountered in parsing the pdb file.")
("input-file,i", po::value< std::string >(&input),
"input pdb file");
po::positional_options_description p;
p.add("input-file", 1);
po::variables_map vm;
po::store(
po::command_line_parser(argc,
argv).options(desc).positional(p).run(),
vm);
po::notify(vm);
if (vm.count("help") || input.empty()) {
print_help();
return 1;
}
IMP_NEW(IMP::Model, m, ());
m->set_log_level(IMP::SILENT);
IMP::set_log_level(IMP::VERBOSE);
IMP::atom::Hierarchies inhs;
IMP_CATCH_AND_TERMINATE(inhs= IMP::atom::read_multimodel_pdb(input, m));
for (unsigned int i=0; i< inhs.size(); ++i) {
IMP::atom::add_bonds(inhs[i]);
}
return 0;
} catch (const IMP::Exception &e) {
std::cerr << "Error: " << e.what() << std::endl;
return 1;
} catch (const std::exception &e) {
std::cerr << "Error: " << e.what() << std::endl;
}
}
int main(int argc, char **argv) {
try {
std::vector<std::string> argcs = IMP::setup_from_argv(
argc, argv, "Print warnings about pdb file", "input.pdb", -1);
IMP::set_log_level(IMP::WARNING);
for (unsigned int i = 0; i < argcs.size(); ++i) {
IMP_NEW(IMP::Model, m, ());
m->set_log_level(IMP::SILENT);
IMP::atom::Hierarchies inhs;
IMP_CATCH_AND_TERMINATE(inhs =
IMP::atom::read_multimodel_pdb(argcs[i], m));
for (unsigned int i = 0; i < inhs.size(); ++i) {
IMP::atom::add_bonds(inhs[i]);
}
}
return 0;
}
catch (const IMP::Exception &e) {
std::cerr << "Error: " << e.what() << std::endl;
return 1;
}
catch (const std::exception &e) {
std::cerr << "Error: " << e.what() << std::endl;
}
}