void RemoteBlastHttpRequestTask::updateProgress() {
if(stateInfo.progress >= 99) {
return;
}
int timeoutInSecs = timer.interval() / 1000;
int elapsedTime = GTimer::secsBetween(timeInfo.startTime, GTimer::currentTimeMicros());
int taskProgress = elapsedTime * 99 / timeoutInSecs;
stateInfo.progress = qMin(taskProgress, 99);
emit si_progressChanged();
}
QList<Task*> Kalign_Load_Align_Compare_Task::onSubTaskFinished(Task* subTask) {
Q_UNUSED(subTask);
QList<Task*> res;
if (hasError() || isCanceled()) {
return res;
}
if (subTask == loadTask1) {
Document *doc = loadTask1->getDocument();
if(loadTask1->hasError()) {
return res;
}
assert(doc!=NULL);
QList<GObject*> list = doc->findGObjectByType(GObjectTypes::SEQUENCE);
if (list.size() == 0) {
stateInfo.setError( QString("container of object with type \"%1\" is empty").arg(GObjectTypes::SEQUENCE) );
return res;
}
MAlignment malign = dna_to_ma(list);
if(hasError()) {
return res;
}
ma1 = MAlignmentImporter::createAlignment(doc->getDbiRef(), malign, stateInfo);
CHECK_OP(stateInfo, res);
if(ma1 == NULL){
stateInfo.setError( QString("can't convert dna sequences to MAlignment") );
return res;
}
res << kalignTask;
this->connect(kalignTask,SIGNAL(si_progressChanged()),SLOT(sl_kalignProgressChg()));
}
else if (subTask == kalignTask) {
if(kalignTask->hasError()) {
setError( kalignTask->getError() );
return res;
}
KalignTask * localKalign = qobject_cast<KalignTask*>( subTask );
assert( NULL != localKalign );
ma1->copyGapModel(localKalign->resultMA.getRows());
}
else if (subTask == loadTask2) {
if (loadTask2->hasError()) {
return res;
}
Document *doc = loadTask2->getDocument();
if(loadTask2->hasError()) {
return res;
}
assert(doc!=NULL);
QList<GObject*> list = doc->findGObjectByType(GObjectTypes::SEQUENCE);
if (list.size() == 0) {
stateInfo.setError( QString("container of object with type \"%1\" is empty").arg(GObjectTypes::SEQUENCE) );
return res;
}
MAlignment malign = dna_to_ma(list);
if(hasError()) {
return res;
}
ma2 = MAlignmentImporter::createAlignment(doc->getDbiRef(), malign, stateInfo);
CHECK_OP(stateInfo, res);
if(ma2 == NULL){
stateInfo.setError( QString("can't convert dna sequences to MAlignment") );
return res;
}
}
return res;
}
