string CGenomicCollectionsService::ValidateChrType(string chrType, string chrLoc)
{
CGCClient_ValidateChrTypeLocRequest req;
CGCClientResponse reply;
req.SetType(chrType);
req.SetLocation(chrLoc);
#ifdef _DEBUG
ostringstream ostrstrm;
ostrstrm << "Making request -" << MSerial_AsnText << req;
LOG_POST(Info << ostrstrm.str());
#endif
try {
return AskGet_chrtype_valid(req, &reply);
} catch (CException& ex) {
if(reply.Which() == CGCClientResponse::e_Srvr_error) {
ERR_POST(Error << " at Server side (will be propagated) ...\n"
<< reply.GetSrvr_error().GetError_id() << ": "
<< reply.GetSrvr_error().GetDescription());
NCBI_THROW(CException, eUnknown, reply.GetSrvr_error().GetDescription());
}
throw;
}
}
CRef<CGC_Assembly> CGenomicCollectionsService::GetAssembly(string acc,
int level,
int asmAttrFlags,
int chrAttrFlags,
int scafAttrFlags,
int compAttrFlags)
{
CGCClient_GetAssemblyRequest req;
CGCClientResponse reply;
req.SetAccession(acc);
req.SetLevel(level);
req.SetAssm_flags(asmAttrFlags);
req.SetChrom_flags(chrAttrFlags);
req.SetScaf_flags(scafAttrFlags);
req.SetComponent_flags(compAttrFlags);
#ifdef _DEBUG
ostringstream ostrstrm;
ostrstrm << "Making request - " << MSerial_AsnText << req;
LOG_POST(Info << ostrstrm.str());
#endif
try {
return AskGet_assembly(req, &reply);
} catch (CException& ex) {
if(reply.Which() == CGCClientResponse::e_Srvr_error) {
ERR_POST(Error << " at Server side (will be propagated) ...\nErrId:"
<< reply.GetSrvr_error().GetError_id() << ": "
<< reply.GetSrvr_error().GetDescription());
NCBI_THROW(CException, eUnknown, reply.GetSrvr_error().GetDescription());
}
throw;
}
}
CRef<CGC_Assembly> CGenomicCollectionsService::GetAssembly(int releaseId,
int level,
int asmAttrFlags,
int chrAttrFlags,
int scafAttrFlags,
int compAttrFlags)
{
CGCClient_GetAssemblyRequest req;
CGCClientResponse reply;
req.SetRelease_id(releaseId);
req.SetLevel(level);
req.SetAssm_flags(asmAttrFlags);
req.SetChrom_flags(chrAttrFlags);
req.SetScaf_flags(scafAttrFlags);
req.SetComponent_flags(compAttrFlags);
#ifdef _DEBUG
ostringstream ostrstrm;
ostrstrm << "Making request -" << MSerial_AsnText << req;
LOG_POST(Info << ostrstrm.str());
#endif
try {
return AskGet_assembly(req, &reply);
} catch (CException& ex) {
if(reply.Which() == CGCClientResponse::e_Srvr_error) {
NCBI_THROW(CException, eUnknown, reply.GetSrvr_error().GetDescription());
}
throw;
}
}