void CalvinCELDataAdapter::GetParameters(FusionTagValuePairTypeList& values)
{
ParameterNameValueTypeVector algParams;
calvinCel.GetAlgorithmParameters(algParams);
for (ParameterNameValueTypeIt ii = algParams.begin(); ii!= algParams.end(); ++ii)
{
FusionTagValuePairType ft;
ft.Tag = ii->GetName();
ft.Value = ii->ToString();
ft.DetailedType() = *ii;
values.push_back(ft);
}
}
std::wstring CalvinCELDataAdapter::GetParams()
{
std::wstring params;
ParameterNameValueTypeVector algParams;
calvinCel.GetAlgorithmParameters(algParams);
for (ParameterNameValueTypeIt ii = algParams.begin(); ii!= algParams.end(); ++ii)
{
if (ii != algParams.begin())
params += L";";
params += ii->GetName();
params += L":";
params += ii->ToString();
}
return params;
}
void GenericDataHeaderWriter::WriteNameValParams(std::ofstream &os, GenericDataHeader &g)
{
ParameterNameValueTypeIt begin;
ParameterNameValueTypeIt end;
g.GetNameValIterators(begin, end);
while(begin != end)
{
FileOutput::WriteString16(os, begin->GetName());
MIMEValue mv = begin->GetMIMEValue();
u_int32_t sz;
const void* ptr = mv.GetValue(sz);
FileOutput::WriteBlob(os, ptr, sz);
FileOutput::WriteString16(os, begin->GetMIMEType());
begin++;
}
}
STDMETHODIMP CFusionCHPMultiDataDataCOM::GetCytoRegionEntries(MultiDataType dataType, VARIANT* names, VARIANT* calls, VARIANT* confidences, VARIANT* callsLOH, VARIANT* confidencesLOH, int startIndex, int *pVal)
{
affymetrix_calvin_io::MultiDataType dt = (affymetrix_calvin_io::MultiDataType) dataType;
int n = chp->GetEntryCount(dt);
long ubound = 0;
long lbound = 0;
long index;
SafeArrayGetUBound(names->parray, 1, &ubound);
SafeArrayGetLBound(names->parray, 1, &lbound);
int len = ubound - lbound + 1;
int count = (len + startIndex <= n ? len : n - startIndex);
*pVal = count;
affymetrix_calvin_data::ProbeSetMultiDataCytoRegionData entry;
for (int i=0; i<count; i++)
{
index = (long) i;
chp->GetCytoRegionEntry(dt, i+startIndex, entry);
_bstr_t bstr = entry.name.c_str();
BSTR bsstr = bstr.copy();
SafeArrayPutElement(names->parray, &index, bsstr);
SysFreeString(bsstr);
SafeArrayPutElement(calls->parray, &index, &entry.call);
SafeArrayPutElement(confidences->parray, &index, &entry.confidenceScore);
for(ParameterNameValueTypeIt it = entry.metrics.begin(); it != entry.metrics.end(); it++)
{
wstring name = it->GetName();
if(name == L"CallLOH")
{
int32_t callLOH = it->GetValueInt32();
SafeArrayPutElement(callsLOH->parray, &index, &callLOH);
}
else if((name == L"ConfidenceLOH"))
{
float confidenceLOH = it->GetValueFloat();
SafeArrayPutElement(confidencesLOH->parray, &index, &confidenceLOH);
}
}
}
return S_OK;
}