PrimitiveRange::PrimitiveRange(PrimitiveType type,
const VertexRange& vertexRange):
m_type(type),
m_vertexBuffer(nullptr),
m_indexBuffer(nullptr),
m_start(0),
m_count(0),
m_base(0)
{
m_vertexBuffer = vertexRange.vertexBuffer();
m_start = vertexRange.start();
m_count = vertexRange.count();
}
list LinearCartesian1D_Domain::get_vertices()
{
list vertices;
typedef LinearCartesian1D_Domain_t DomainType;
typedef viennagrid::result_of::element_range<DomainType, viennagrid::vertex_tag>::type VertexRange;
typedef viennagrid::result_of::iterator<VertexRange>::type VertexIterator;
VertexRange range = viennagrid::elements(domain);
for (VertexIterator it = range.begin(); it != range.end(); ++it)
vertices.append<LinearCartesian1D_Vertex>(LinearCartesian1D_Vertex(*it));
return vertices;
}
LinearSpherical3D_Vertex LinearSpherical3D_Domain::get_vertex(unsigned int index)
{
typedef LinearSpherical3D_VertexRange_t VertexRange;
typedef viennagrid::result_of::iterator<VertexRange>::type VertexIterator;
typedef LinearSpherical3D_Vertex_t::id_type VertexIDType;
VertexIterator vertex = viennagrid::find_by_id(domain, VertexIDType(index));
VertexRange range = viennagrid::elements(domain);
if (vertex == range.end())
{
std::stringstream ss;
ss << "no vertex at index " << index;
throw std::out_of_range(ss.str());
}
return LinearSpherical3D_Vertex(*vertex);
}
void AddPartialSharedRanges(Overlap & ovrlp, // out
Partition const& Prtng,
int p,
Part2Cell const& P2C,
VertexRange const& shared_v,
FacetRange const& shared_f,
VtxCorr const& vtx_corr,
FacetCorr const& facet_corr)
{
// for(int p = 0; p < (int) Prtng.NumOfPartitions(); ++p) {
typedef typename FacetRange::ElementIterator RgeFacetIterator;
for(RgeFacetIterator f = shared_f.FirstElement(); ! f.IsDone(); ++f) {
int q = Prtng.other_partition(*f,p);
// if(p > q) { // <---- unsymmetric
if( (P2C(q) < P2C(p)) || (P2C(p) == P2C(q) && p > q)) { // <---- unsymmetric
ovrlp[P2C(p)].facets(P2C(q)).shared().push_back(*f); // local
if( q < 0)
ovrlp[P2C(q)].facets(P2C(p)).shared().push_back(facet_corr(*f)); // "remote"
else
ovrlp[P2C(q)].facets(P2C(p)).shared().push_back(*f); // "local"
}
}
// }
PartitionsByVertex<Partition> PV(Prtng);
typedef typename PartitionsByVertex<Partition>::PartitionOfVertexIterator VtxPartIterator;
// for(int p = 0; p < (int) Prtng.NumOfPartitions(); ++p) {
// CoarseCell P(Prtng.PartCell());
typedef typename VertexRange::ElementIterator RgeVertexIterator;
for(RgeVertexIterator v = shared_v.FirstElement(); ! v.IsDone(); ++v) {
for(VtxPartIterator qi = PV.begin(*v); qi != PV.end(*v); ++qi) {
int q = *qi;
// if(p > q) { // <---- unsymmetric
if( (P2C(q) < P2C(p)) || (P2C(p) == P2C(q) && p > q)) { // <---- unsymmetric
ovrlp[P2C(p)].vertices(P2C(q)).shared().push_back(*v); // local
if( q < 0)
ovrlp[P2C(q)].vertices(P2C(p)).shared().push_back(vtx_corr(*v)); // "remote"
else
ovrlp[P2C(q)].vertices(P2C(p)).shared().push_back(*v); // "local"
}
}
}
// }
}
void Font::drawText(vec2 pen, vec4 color, const char* text)
{
uint vertexCount = 0;
// Realize vertices for glyphs
{
const size_t length = std::strlen(text);
m_vertices.resize(length * 6);
for (const char* c = text; *c != '\0'; )
{
const uint32 codepoint = utf8::next<const char*>(c, text + length);
const Glyph* glyph = findGlyph(codepoint);
if (!glyph)
{
glyph = findGlyph(0xfffd);
if (!glyph)
continue;
}
pen = round(pen);
if (all(greaterThan(glyph->size, vec2(0.f))))
{
const Rect pa(pen + glyph->bearing - vec2(0.5f), glyph->size);
const Rect ta(glyph->offset + vec2(0.5f), glyph->size);
m_vertices[vertexCount + 0].texcoord = ta.position;
m_vertices[vertexCount + 0].position = pa.position;
m_vertices[vertexCount + 1].texcoord = ta.position + vec2(ta.size.x, 0.f);
m_vertices[vertexCount + 1].position = pa.position + vec2(pa.size.x, 0.f);
m_vertices[vertexCount + 2].texcoord = ta.position + ta.size;
m_vertices[vertexCount + 2].position = pa.position + pa.size;
m_vertices[vertexCount + 3] = m_vertices[vertexCount + 2];
m_vertices[vertexCount + 4].texcoord = ta.position + vec2(0.f, ta.size.y);
m_vertices[vertexCount + 4].position = pa.position + vec2(0.f, pa.size.y);
m_vertices[vertexCount + 5] = m_vertices[vertexCount + 0];
vertexCount += 6;
}
pen += vec2(glyph->advance, 0.f);
}
}
if (!vertexCount)
return;
VertexRange range = m_context.allocateVertices(vertexCount,
Vertex2ft2fv::format);
if (range.isEmpty())
{
logError("Failed to allocate vertices for text drawing");
return;
}
range.copyFrom(m_vertices.data());
m_pass.setUniformState(m_colorIndex, color);
m_pass.apply();
m_context.render(PrimitiveRange(TRIANGLE_LIST, range));
}
int main( int argc, char** argv )
{
QApplication application(argc,argv);
string inputFilename = argc > 1 ? argv[ 1 ] : examplesPath+"/samples/Al.100.vol";
int threshold = argc > 2 ? atoi( argv[ 2 ] ) : 0;
int widthNum = argc > 3 ? atoi( argv[ 3 ] ) : 2;
int widthDen = argc > 4 ? atoi( argv[ 4 ] ) : 1;
//! [polyhedralizer-readVol]
trace.beginBlock( "Reading vol file into an image." );
typedef ImageContainerBySTLVector< Domain, int> Image;
Image image = VolReader<Image>::importVol(inputFilename);
typedef functors::SimpleThresholdForegroundPredicate<Image> DigitalObject;
DigitalObject digitalObject( image, threshold );
trace.endBlock();
//! [polyhedralizer-readVol]
//! [polyhedralizer-KSpace]
trace.beginBlock( "Construct the Khalimsky space from the image domain." );
KSpace ks;
bool space_ok = ks.init( image.domain().lowerBound(), image.domain().upperBound(), true );
if (!space_ok)
{
trace.error() << "Error in the Khamisky space construction."<<endl;
return 2;
}
trace.endBlock();
//! [polyhedralizer-KSpace]
//! [polyhedralizer-SurfelAdjacency]
typedef SurfelAdjacency<KSpace::dimension> MySurfelAdjacency;
MySurfelAdjacency surfAdj( false ); // exterior in all directions.
//! [polyhedralizer-SurfelAdjacency]
//! [polyhedralizer-ExtractingSurface]
trace.beginBlock( "Extracting boundary by tracking the surface. " );
typedef KSpace::Surfel Surfel;
Surfel start_surfel = Surfaces<KSpace>::findABel( ks, digitalObject, 100000 );
typedef ImplicitDigitalSurface< KSpace, DigitalObject > MyContainer;
typedef DigitalSurface< MyContainer > MyDigitalSurface;
typedef MyDigitalSurface::ConstIterator ConstIterator;
MyContainer container( ks, digitalObject, surfAdj, start_surfel );
MyDigitalSurface digSurf( container );
trace.info() << "Digital surface has " << digSurf.size() << " surfels."
<< endl;
trace.endBlock();
//! [polyhedralizer-ExtractingSurface]
//! [polyhedralizer-ComputingPlaneSize]
// First pass to find biggest planes.
trace.beginBlock( "Decomposition first pass. Computes all planes so as to sort vertices by the plane size." );
typedef BreadthFirstVisitor<MyDigitalSurface> Visitor;
typedef ChordGenericNaivePlaneComputer<Z3,Z3::Point, DGtal::int64_t> NaivePlaneComputer;
map<Surfel,unsigned int> v2size;
for ( ConstIterator it = digSurf.begin(), itE= digSurf.end(); it != itE; ++it )
v2size[ *it ] = 0;
int j = 0;
int nb = digSurf.size();
NaivePlaneComputer planeComputer;
vector<Point> layer;
vector<Surfel> layer_surfel;
for ( ConstIterator it = digSurf.begin(), itE= digSurf.end(); it != itE; ++it )
{
if ( ( (++j) % 50 == 0 ) || ( j == nb ) ) trace.progressBar( j, nb );
Surfel v = *it;
planeComputer.init( widthNum, widthDen );
// The visitor takes care of all the breadth-first traversal.
Visitor visitor( digSurf, v );
layer.clear();
layer_surfel.clear();
Visitor::Size currentSize = visitor.current().second;
while ( ! visitor.finished() )
{
Visitor::Node node = visitor.current();
v = node.first;
int axis = ks.sOrthDir( v );
Point p = ks.sCoords( ks.sDirectIncident( v, axis ) );
if ( node.second != currentSize )
{
bool isExtended = planeComputer.extend( layer.begin(), layer.end() );
if ( isExtended )
{
for ( vector<Surfel>::const_iterator it_layer = layer_surfel.begin(),
it_layer_end = layer_surfel.end(); it_layer != it_layer_end; ++it_layer )
{
++v2size[ *it_layer ];
}
layer_surfel.clear();
layer.clear();
currentSize = node.second;
}
else
break;
}
layer_surfel.push_back( v );
layer.push_back( p );
visitor.expand();
}
}
// Prepare queue
typedef PairSorted2nd<Surfel,int> SurfelWeight;
priority_queue<SurfelWeight> Q;
for ( ConstIterator it = digSurf.begin(), itE= digSurf.end(); it != itE; ++it )
Q.push( SurfelWeight( *it, v2size[ *it ] ) );
trace.endBlock();
//! [polyhedralizer-ComputingPlaneSize]
//! [polyhedralizer-segment]
// Segmentation into planes
trace.beginBlock( "Decomposition second pass. Visits vertices from the one with biggest plane to the one with smallest plane." );
typedef Triple<NaivePlaneComputer, Color, pair<RealVector,double> > RoundPlane;
set<Surfel> processedVertices;
vector<RoundPlane*> roundPlanes;
map<Surfel,RoundPlane*> v2plane;
j = 0;
while ( ! Q.empty() )
{
if ( ( (++j) % 50 == 0 ) || ( j == nb ) ) trace.progressBar( j, nb );
Surfel v = Q.top().first;
Q.pop();
if ( processedVertices.find( v ) != processedVertices.end() ) // already in set
continue; // process to next vertex
RoundPlane* ptrRoundPlane = new RoundPlane;
roundPlanes.push_back( ptrRoundPlane ); // to delete them afterwards.
v2plane[ v ] = ptrRoundPlane;
ptrRoundPlane->first.init( widthNum, widthDen );
ptrRoundPlane->third = make_pair( RealVector::zero, 0.0 );
// The visitor takes care of all the breadth-first traversal.
Visitor visitor( digSurf, v );
layer.clear();
layer_surfel.clear();
Visitor::Size currentSize = visitor.current().second;
while ( ! visitor.finished() )
{
Visitor::Node node = visitor.current();
v = node.first;
Dimension axis = ks.sOrthDir( v );
Point p = ks.sCoords( ks.sDirectIncident( v, axis ) );
if ( node.second != currentSize )
{
bool isExtended = ptrRoundPlane->first.extend( layer.begin(), layer.end() );
if ( isExtended )
{
for ( vector<Surfel>::const_iterator it_layer = layer_surfel.begin(),
it_layer_end = layer_surfel.end(); it_layer != it_layer_end; ++it_layer )
{
Surfel s = *it_layer;
processedVertices.insert( s );
if ( v2plane.find( s ) == v2plane.end() )
v2plane[ s ] = ptrRoundPlane;
}
layer.clear();
layer_surfel.clear();
currentSize = node.second;
}
else break;
}
layer_surfel.push_back( v );
layer.push_back( p );
if ( processedVertices.find( v ) != processedVertices.end() )
// surfel is already in some plane.
visitor.ignore();
else
visitor.expand();
}
if ( visitor.finished() )
{
for ( vector<Surfel>::const_iterator it_layer = layer_surfel.begin(),
it_layer_end = layer_surfel.end(); it_layer != it_layer_end; ++it_layer )
{
Surfel s = *it_layer;
processedVertices.insert( s );
if ( v2plane.find( s ) == v2plane.end() )
v2plane[ s ] = ptrRoundPlane;
}
}
// Assign random color for each plane.
ptrRoundPlane->second = Color( rand() % 192 + 64, rand() % 192 + 64, rand() % 192 + 64, 255 );
}
trace.endBlock();
//! [polyhedralizer-segment]
//! [polyhedralizer-lsf]
for ( vector<RoundPlane*>::iterator
it = roundPlanes.begin(), itE = roundPlanes.end();
it != itE; ++it )
{
NaivePlaneComputer& computer = (*it)->first;
RealVector normal;
double mu = LSF( normal, computer.begin(), computer.end() );
(*it)->third = make_pair( normal, mu );
}
//! [polyhedralizer-lsf]
//! [polyhedralizer-projection]
map<Surfel, RealPoint> coordinates;
for ( map<Surfel,RoundPlane*>::const_iterator
it = v2plane.begin(), itE = v2plane.end();
it != itE; ++it )
{
Surfel v = it->first;
RoundPlane* rplane = it->second;
Point p = ks.sKCoords( v );
RealPoint rp( (double)p[ 0 ]/2.0, (double)p[ 1 ]/2.0, (double)p[ 2 ]/2.0 );
double mu = rplane->third.second;
RealVector normal = rplane->third.first;
double lambda = mu - rp.dot( normal );
coordinates[ v ] = rp + lambda*normal;
}
typedef vector<Surfel> SurfelRange;
map<Surfel, RealPoint> new_coordinates;
for ( ConstIterator it = digSurf.begin(), itE= digSurf.end(); it != itE; ++it )
{
Surfel s = *it;
SurfelRange neighbors;
back_insert_iterator<SurfelRange> writeIt = back_inserter( neighbors );
digSurf.writeNeighbors( writeIt, *it );
RealPoint x = RealPoint::zero;
for ( SurfelRange::const_iterator its = neighbors.begin(), itsE = neighbors.end();
its != itsE; ++its )
x += coordinates[ *its ];
new_coordinates[ s ] = x / neighbors.size();
}
//! [polyhedralizer-projection]
//! [polyhedralizer-MakeMesh]
typedef unsigned int Number;
typedef Mesh<RealPoint> MyMesh;
typedef MyMesh::MeshFace MeshFace;
typedef MyDigitalSurface::FaceSet FaceSet;
typedef MyDigitalSurface::VertexRange VertexRange;
map<Surfel, Number> index; // Numbers all vertices.
Number nbv = 0;
MyMesh polyhedron( true );
// Insert all projected surfels as vertices of the polyhedral surface.
for ( ConstIterator it = digSurf.begin(), itE= digSurf.end(); it != itE; ++it )
{
polyhedron.addVertex( new_coordinates[ *it ] );
index[ *it ] = nbv++;
}
// Define faces of the mesh. Outputs closed faces.
FaceSet faces = digSurf.allClosedFaces();
for ( typename FaceSet::const_iterator itf = faces.begin(), itf_end = faces.end();
itf != itf_end; ++itf )
{
MeshFace mface( itf->nbVertices );
VertexRange vtcs = digSurf.verticesAroundFace( *itf );
int i = 0;
for ( typename VertexRange::const_iterator itv = vtcs.begin(), itv_end = vtcs.end();
itv != itv_end; ++itv )
{
mface[ i++ ] = index[ *itv ];
}
polyhedron.addFace( mface, Color( 255, 243, 150, 255 ) );
}
//! [polyhedralizer-MakeMesh]
//! [polyhedralizer-visualization]
typedef Viewer3D<Space,KSpace> MyViewer3D;
MyViewer3D viewer( ks );
viewer.show();
bool isOK = polyhedron >> "test.off";
bool isOK2 = polyhedron >> "test.obj";
viewer << polyhedron;
viewer << MyViewer3D::updateDisplay;
application.exec();
//! [polyhedralizer-visualization]
//! [polyhedralizer-freeMemory]
for ( vector<RoundPlane*>::iterator
it = roundPlanes.begin(), itE = roundPlanes.end();
it != itE; ++it )
delete *it;
//! [polyhedralizer-freeMemory]
if (isOK && isOK2)
return 0;
else
return 1;
}