Directory order /tree structure 
* starting with capital letter (written by L.B)

1. GetOPTData --> 
   -- read 2D binary data (raw from scanner) and its corresponding log file
   -- create a 3D image which includes .bin(s) and the .log image information
   -- methods to retrieve information from log file

2. CCD
3. SignalDecay --> (photobleaching and light fluctuations)
4. PSF --> includes all FDR code!
5. ctsim-5.2.0 --> ctsim with python boot wrapper (wrappers)
6. MINC --> helper functions for minc2 use
7. pyScripts --> python scripts