freesurfer

The official Freesurfer repository maintained by LCN

Terms and conditions for use, reproduction, distribution and contribution are found in the 'FreeSurfer Software License Agreement' contained in the file 'LICENSE' found in the FreeSurfer distribution, and here:

https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferSoftwareLicense

FreeSurfer documentation is found online at:

http://surfer.nmr.mgh.harvard.edu/fswiki

For questions and support, email:

freesurfer@nmr.mgh.harvard.edu

Building

See the following webpage for information on how to build the freesurfer source code.

https://surfer.nmr.mgh.harvard.edu/fswiki/freesurfer_linux_developers_page

Contributing

See the following webpage if you are interested in contributing to the project.

https://surfer.nmr.mgh.harvard.edu/fswiki/Freesurfer_github

Name		Name	Last commit message	Last commit date
Latest commit History 24,700 Commits
BrainstemSS		BrainstemSS
GEMS2		GEMS2
HippoSF		HippoSF
build-aux		build-aux
check_siemens_dir		check_siemens_dir
config		config
connectgraph		connectgraph
cudatest		cudatest
dicom		dicom
distribution		distribution
dmri_poistats		dmri_poistats
dmri_tensoreig		dmri_tensoreig
dngtester		dngtester
docs		docs
dummy		dummy
dummy_qt		dummy_qt
expat		expat
fem_elastic		fem_elastic
freeview		freeview
fsfast		fsfast
fsgdf		fsgdf
fslutils		fslutils
glut		glut
gpu_utils		gpu_utils
hiam_make_surfaces		hiam_make_surfaces
hiam_make_template		hiam_make_template
hiam_register		hiam_register
hipsstubs		hipsstubs
histo_compute_joint_density		histo_compute_joint_density
histo_fix_topology		histo_fix_topology
histo_register		histo_register
histo_register_block		histo_register_block
histo_segment		histo_segment
histo_synthesize		histo_synthesize
images		images
include		include
itkio		itkio
itkutils		itkutils
jpeg		jpeg
label2flat		label2flat
label2patch		label2patch
label_area		label_area
label_border		label_border
lineprof		lineprof
log		log
lta_convert		lta_convert
m4		m4
matlab		matlab
mkxsubjreg		mkxsubjreg
mri_add_xform_to_header		mri_add_xform_to_header
mri_and		mri_and
mri_annotation2label		mri_annotation2label
mri_aparc2aseg		mri_aparc2aseg
mri_aparc2wmseg		mri_aparc2wmseg
mri_apply_inu_correction		mri_apply_inu_correction
mri_aseg_edit_reclassify		mri_aseg_edit_reclassify
mri_aseg_edit_train		mri_aseg_edit_train
mri_auto_fill		mri_auto_fill
mri_average		mri_average
mri_bc_sc_bias_correct		mri_bc_sc_bias_correct
mri_bias		mri_bias
mri_binarize		mri_binarize
mri_build_priors		mri_build_priors
mri_ca_label		mri_ca_label
mri_ca_normalize		mri_ca_normalize
mri_ca_register		mri_ca_register
mri_ca_tissue_parms		mri_ca_tissue_parms
mri_ca_train		mri_ca_train
mri_cal_renormalize_gca		mri_cal_renormalize_gca
mri_cc		mri_cc
mri_cc_ma_fill		mri_cc_ma_fill
mri_cc_medial_axis		mri_cc_medial_axis
mri_cht2p		mri_cht2p
mri_classify		mri_classify
mri_cnr		mri_cnr
mri_compile_edits		mri_compile_edits
mri_compute_change_map		mri_compute_change_map
mri_compute_overlap		mri_compute_overlap
mri_compute_seg_overlap		mri_compute_seg_overlap
mri_compute_structure_transforms		mri_compute_structure_transforms
mri_compute_volume_fractions		mri_compute_volume_fractions
mri_concat		mri_concat
mri_concatenate_gcam		mri_concatenate_gcam
mri_concatenate_lta		mri_concatenate_lta
mri_convert		mri_convert
mri_convert_mdh		mri_convert_mdh
mri_copy_values		mri_copy_values
mri_cor2label		mri_cor2label
mri_coreg		mri_coreg
mri_correct_segmentations		mri_correct_segmentations
mri_cvs_register		mri_cvs_register
mri_dct_align		mri_dct_align
mri_deface		mri_deface
mri_diff		mri_diff
mri_distance_transform		mri_distance_transform
mri_divide_segmentation		mri_divide_segmentation
mri_edit_segmentation		mri_edit_segmentation
mri_edit_segmentation_with_surfaces		mri_edit_segmentation_with_surfaces
mri_edit_wm_with_aseg		mri_edit_wm_with_aseg
mri_elastic_energy		mri_elastic_energy

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zkaufman/freesurfer

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