C++ (Cpp) Pos::InitializeFromSuffixArray Examples

Example #1

File: BWT.hpp Project: bnbowman/blasr_libcpp

	void InitializeFromSuffixArray(T_DNASequence &dnaSeq, DNALength saIndex[], int buildDebug=0) {
		useDebugData = buildDebug;
		InitializeBWTStringFromSuffixArray(dnaSeq, saIndex);
		InitializeDNACharacterCount();

		// sequence, major, minor bin sizes.
		occ.Initialize(bwtSequence, 4096, 64, buildDebug);
		pos.InitializeFromSuffixArray(saIndex, dnaSeq.length);
	}