Example #1
0
	int Read(std::string inName) {
		std::ifstream bwtIn;
		CrucialOpen(inName, bwtIn, std::ios::binary|std::ios::in);
		bwtSequence.Read(bwtIn);
		bwtIn.read((char*)charCount, sizeof(DNALength)*CharCountSize);
		bwtIn.read((char*)&firstCharPos, sizeof(DNALength));
		bwtIn.read((char*)&useDebugData, sizeof(useDebugData));
		if (useDebugData) {
			saCopy.resize(bwtSequence.length-1);
			bwtIn.read((char*)&saCopy[0], (bwtSequence.length-1) * sizeof(DNALength));
		}
		occ.Read(bwtIn, useDebugData);
		pos.Read(bwtIn);
		occ.InitializeBWT(bwtSequence);
		return 1;
	}