C++ (Cpp) Seq::SetId Examples

Example #1

File: refinew.cpp Project: Wyss/mauve-py

static void SeqFromMSACols(const MSA &msa, unsigned uSeqIndex, unsigned uColFrom,
  unsigned uColTo, Seq &s)
	{
	s.Clear();
	s.SetName(msa.GetSeqName(uSeqIndex));
	s.SetId(msa.GetSeqId(uSeqIndex));
	for (unsigned uColIndex = uColFrom; uColIndex <= uColTo; ++uColIndex)
		{
		char c = msa.GetChar(uSeqIndex, uColIndex);
		if (!IsGapChar(c))
			s.AppendChar(c);
		}
	}

Example #2

File: makerootmsa.cpp Project: Unode/ext_apps

static void MakeRootSeq(const Seq &s, const Tree &GuideTree, unsigned uLeafNodeIndex,
  const ProgNode Nodes[], Seq &sRoot)
	{
	sRoot.Copy(s);
	unsigned uNodeIndex = uLeafNodeIndex;
	for (;;)
		{
	  	unsigned uParent = GuideTree.GetParent(uNodeIndex);
		if (NULL_NEIGHBOR == uParent)
			break;
		bool bRight = (GuideTree.GetLeft(uParent) == uNodeIndex);
		uNodeIndex = uParent;
		const PWPath &Path = Nodes[uNodeIndex].m_Path;
		Seq sTmp;
		PathSeq(sRoot, Path, bRight, sTmp);
		sTmp.SetId(0);
		sRoot.Copy(sTmp);
		}
	}

Example #3

File: seqvect.cpp Project: cran/muscle

void SeqVect::SetSeqId(unsigned uSeqIndex, unsigned uId)
	{
	assert(uSeqIndex < size());
	Seq *ptrSeq = at(uSeqIndex);
	return ptrSeq->SetId(uId);
	}