void Bagger::buildTree(){
int treeId;
// Choose tree id
m_chooseTree->lock();
treeId = m_treeId++;
m_chooseTree->unlock();
// sorting is performed inside this constructor
DataCachePtr myData = DataCachePtr(new DataCache(m_data,m_evaluation,m_seed));
// create the in-bag dataset (and be sure to remember what's in bag)
// for computing the out-of-bag error later
DataCachePtr bagData = myData->resample(m_bagSize);
/*bagData.reusableRandomGenerator = bagData.getRandomNumberGenerator(
random.nextInt());*/
m_inBag[treeId] = bagData->inBag;
// build the classifier
RandomTreePtr aTree = m_trees[treeId];
aTree->data = bagData;
TimerPtr timer = TimerPtr(new boost::timer);
aTree->build();
double time = timer->elapsed();
m_chooseTree->lock();
m_buildTime += time;
m_totalNumNodes += aTree->getNumNodes();
m_chooseTree->unlock();
}
TimerPtr
Dashboard::getTimer(const std::string & theName) {
std::map<std::string,TimerPtr>::iterator found = _myTimers.find(theName);
if (found == _myTimers.end()) {
TimerPtr myParent = findParent();
TimerPtr myNewTimer = TimerPtr(new Timer(myParent));
_myTimers[theName] = myNewTimer;
myNewTimer->setName(theName);
_mySortedTimers.push_back(std::make_pair(theName, myNewTimer));
return myNewTimer;
}
return found->second;
}
void GPUERT::deviceHandler(){
m_devId = m_gfxMgr->createDeviceContext(m_devId);
calculateMaxNodes(m_devId);
initResources();
m_constantsBagging.cb_baggingActivated = false;
TimerPtr timerKernel = TimerPtr(new boost::timer);
TimerPtr timer = TimerPtr(new boost::timer);
TimerPtr timerTotal = TimerPtr(new boost::timer);
m_internalNodes = 0, m_leafNodes = 0;
int treesLeft = m_numTrees;
int treesToLaunch = m_maxTreesPerIteration;
int lastLaunch = 0;
int checkSum = m_maxTreesPerIteration;
int newNodes = m_maxTreesPerIteration;
std::vector<int> checkVars(4,0);
m_buildTime = 0;
m_baggingTime = 0;
m_classificationTime = 0;
m_depth = 0;
timerTotal->restart();
int numIter = ceil(float(m_numTrees)/float(m_maxTreesPerIteration));
for(unsigned int j=0; j<numIter; ++j){
checkSum = treesToLaunch;
newNodes = treesToLaunch;
m_constants.cb_nodeBufferStart = 0;
m_constants.cb_nodeIdFlip = 0;
initResourceBatch(lastLaunch == treesToLaunch);
lastLaunch = treesToLaunch;
treesLeft -= treesToLaunch;
timer->restart();
for(unsigned int i=0; i<m_MaxDepth; ++i){
if(i > m_depth)
m_depth = i;
assert(newNodes < m_maxNodesPerIteration);
int nodeLimit = 10000;
int innerNodes = newNodes;
int numInnerIter = ceil(float(innerNodes)/float(nodeLimit));
int launchCount = 0;
m_constants.cb_availableNodes = newNodes;
m_constants.cb_numFeatures = 0;
timerKernel->restart();
for(unsigned int k=0; k<m_numFeatures; ++k){
innerNodes = newNodes;
numInnerIter = ceil(float(innerNodes)/float(nodeLimit));
launchCount = 0;
// Best split kernel
m_gfxMgr->setGPUBuffer(m_devId,m_setBufferIdsExFindSplit,m_setResourceTypesExFindSplit);
m_gfxMgr->setGPUProgram(m_devId,m_gpuFunctionIds["RFP_ExFindSplit"]);
innerNodes = newNodes;
launchCount = 0;
m_constants.cb_currentDepth = 0;
for(unsigned int l=0; l<numInnerIter; ++l){
launchCount = innerNodes > nodeLimit ? nodeLimit : innerNodes;
m_gfxMgr->copyToGPU(m_devId,m_bufferIds["RFB_constants"],&ConstantUpdate(&m_constants,KID_ExtremeFindSplit),sizeof(m_constants));
m_gfxMgr->launchComputation(m_devId,launchCount*thread_group_size,1,1);
m_constants.cb_currentDepth += launchCount;
innerNodes -= launchCount;
if(innerNodes <= 0)
break;
}
++m_constants.cb_numFeatures;
}
if(m_kernelSpecificTimings){
m_gfxMgr->syncDevice(m_devId);
m_kernelTimes[L"RFP_ExFindSplit"] += timerKernel->elapsed();
}
innerNodes = newNodes;
launchCount = 0;
m_constants.cb_currentDepth = 0;
m_gfxMgr->setGPUBuffer(m_devId,m_setBufferIdsExMakeSplit,m_setResourceTypesExMakeSplit);
m_gfxMgr->setGPUProgram(m_devId,m_gpuFunctionIds["RFP_ExMakeSplit"]);
// Split data
timerKernel->restart();
for(unsigned int k=0; k<numInnerIter; ++k){
launchCount = innerNodes > nodeLimit ? nodeLimit : innerNodes;
m_gfxMgr->copyToGPU(m_devId,m_bufferIds["RFB_constants"],&ConstantUpdate(&m_constants,KID_ExtremeMakeSplit),sizeof(m_constants));
m_gfxMgr->launchComputation(m_devId,launchCount*thread_group_size,1,1);
m_constants.cb_currentDepth += launchCount;
innerNodes -= launchCount;
if(innerNodes <= 0)
break;
}
if(m_kernelSpecificTimings){
m_gfxMgr->syncDevice(m_devId);
m_kernelTimes[L"RFP_ExMakeSplit"] += timerKernel->elapsed();
}
// Swap buffer to avoid unecessary copying
int tmpBuffId = m_bufferIds["RFB_nodeIndices"];
m_bufferIds["RFB_nodeIndices"] = m_bufferIds["RFB_nodeIndicesMirror"];
m_bufferIds["RFB_nodeIndicesMirror"] = tmpBuffId;
setBufferSettings();
m_constants.cb_currentDepth = i;
// Evaluate splits
timerKernel->restart();
m_gfxMgr->setGPUBuffer(m_devId,m_setBufferIdsExCreateNodes,m_setResourceTypesExCreateNodes);
m_gfxMgr->copyToGPU(m_devId,m_bufferIds["RFB_constants"],&ConstantUpdate(&m_constants,KID_ExtremeCreateNodes),sizeof(m_constants));
m_gfxMgr->setGPUProgram(m_devId,m_gpuFunctionIds["RFP_ExCreateNodes"]);
m_gfxMgr->launchComputation(m_devId,newNodes,1,1);
// Get continuation variables
m_gfxMgr->copyFromGPU(m_devId,m_bufferIds["RFB_checkVariables"],&checkVars[0],checkVars.size()*sizeof(int));
if(m_kernelSpecificTimings){
m_gfxMgr->syncDevice(m_devId);
m_kernelTimes[L"RFP_ExCreateNd"] += timerKernel->elapsed();
}
m_constants.cb_nodeBufferStart = checkSum;
checkSum = checkVars[2];
m_leafNodes += checkVars[3];
newNodes = checkSum;
m_internalNodes += checkSum;
checkVars[1] = 0;
checkVars[2] = 0;
checkVars[3] = 0;
m_gfxMgr->copyToGPU(m_devId,m_bufferIds["RFB_checkVariables"],&checkVars[0],checkVars.size()*sizeof(int));
m_constants.cb_nodeIdFlip = (m_constants.cb_nodeIdFlip == 0) ? 1 : 0;
if(newNodes <= 0)
break;
}
m_buildTime += timer->elapsed();
// Vote on test instances
timer->restart();
runClassificationProcess(treesToLaunch);
m_classificationTime += timer->elapsed();
if(m_saveModel)
getResultsFromGPU();
m_data->m_gui->setProgressBar(IDC_PROGRESSBAR_PROGRESS,100,(float(m_numTrees-treesLeft)/float(m_numTrees))*100);
if(treesLeft != 0 && treesLeft < m_maxTreesPerIteration){
treesToLaunch = treesLeft;
m_maxTreesPerIteration = treesToLaunch;
}
}
getVotesFromGPU();
m_totalTime = timerTotal->elapsed();
m_bar->wait();
}
void ExRandomTrees::run(){
std::string setting = m_data->m_gui->getEditText(IDC_RANDFOREST_NUMFEATURES);
try{
m_numFeatures = boost::lexical_cast<int,std::string>(setting);
}
catch(...){
m_numFeatures = (int)log((float)m_document->getNumAttributes())+1;
}
if(m_numFeatures == 0)
m_numFeatures = (int)log((float)m_document->getNumAttributes())+1;
setting = m_data->m_gui->getEditText(IDC_RANDFOREST_NUMTREES);
try{
m_numTrees = boost::lexical_cast<int,std::string>(setting);
}
catch(...){
m_numTrees = 10;
}
setting = m_data->m_gui->getEditText(IDC_RANDFOREST_TREEDEPTH);
try{
m_maxDepth = boost::lexical_cast<int,std::string>(setting);
}
catch(...){
m_maxDepth = 100;
}
setting = m_data->m_gui->getEditText(IDC_RANDFOREST_SEED);
try{
m_randomSeed = boost::lexical_cast<int,std::string>(setting);
}
catch(...){
m_randomSeed = 100;
}
setting = m_data->m_gui->getEditText(IDC_RANDFOREST_MAXINST);
try{
m_minNumInst = boost::lexical_cast<int,std::string>(setting);
}
catch(...){
m_minNumInst = 10;
}
m_dataSetTrain.assign(m_document->getNumAttributes(),std::vector<float>(m_evaluation->getNumTrainingInstances(),0));
m_classSetTrain.assign(m_document->getNumInstances(),0);
m_dataSetTest.assign(m_document->getNumAttributes(),std::vector<float>(m_evaluation->getNumTestingInstances(),0));
m_classSetTest.assign(m_evaluation->getNumTestingInstances(),0);
for(unsigned int a=0; a<m_document->getNumAttributes(); ++a){
for(unsigned int i=0; i<m_evaluation->getNumTrainingInstances(); ++i){
m_dataSetTrain[a][i] = m_evaluation->getTrainingInstance(i)->getValue(a);
if(a == 0)
m_classSetTrain[i] = m_evaluation->getTrainingInstance(i)->classValue();
}
for(unsigned int i=0; i<m_evaluation->getNumTestingInstances(); ++i){
m_dataSetTest[a][i] = m_evaluation->getTestingInstance(i)->getValue(a);
if(a == 0)
m_classSetTest[i] = m_evaluation->getTestingInstance(i)->classValue();
}
}
// Create trees
ExTree tree = ExTree(m_evaluation->getNumTrainingInstances());
m_trees.assign(m_numTrees,tree);
// Seed treees
boost::random::uniform_int_distribution<> indRand(0,INT_MAX);
boost::random::mt19937 rng;
rng.seed(m_randomSeed);
for(unsigned int i=0; i<m_trees.size(); ++i){
m_trees[i].seed(indRand(rng));
}
m_choiceId = 0;
m_workLeft = m_numTrees;
m_chooseIdLock = MutexPtr(new boost::mutex);
m_barrier = BarrierPtr(new boost::barrier(2));
TM_runFunctionPtr runFunc = TM_runFunctionPtr(new boost::function<void(void)>(std::bind(std::mem_fun(&ExRandomTrees::buildTree),this)));
TM_callbackFunctionPtr callbackFunc = TM_callbackFunctionPtr(new boost::function<void(int)>(std::bind1st(std::mem_fun(&ExRandomTrees::buildTreeCallback),this)));
for(size_t treeIdx = 0; treeIdx < m_trees.size(); ++treeIdx) {
ThreadManager::queueWorkPackage(runFunc,callbackFunc);
}
// Start tree building threads
TimerPtr timer = TimerPtr(new boost::timer);
ThreadManager::executeWorkQueue();
// Make sure all trees have been trained before proceeding
m_barrier->wait();
m_buildTimer = timer->elapsed();
evaluateTestSet();
}
void ExRandomTrees::evaluateTestSet(){
m_votes.assign(m_evaluation->getNumTestingInstances()*2,0);
m_workLeft = m_trees.size();
m_choiceId = 0;
TM_runFunctionPtr runFunc = TM_runFunctionPtr(new boost::function<void(void)>(std::bind(std::mem_fun(&ExRandomTrees::collectSingleVote),this)));
TM_callbackFunctionPtr callbackFunc = TM_callbackFunctionPtr(new boost::function<void(int)>(std::bind1st(std::mem_fun(&ExRandomTrees::buildTreeCallback),this)));
for(size_t treeIdx = 0; treeIdx < m_trees.size(); ++treeIdx) {
ThreadManager::queueWorkPackage(runFunc,callbackFunc);
}
// Start tree building threads
TimerPtr timer = TimerPtr(new boost::timer);
ThreadManager::executeWorkQueue();
m_barrier->wait();
m_testTimer = timer->elapsed();
unsigned int correct = 0,wrong = 0;
std::map<double,std::vector<bool>,std::greater<double>> rankingcl1,rankingcl2;
bool truePositive;
std::vector<int> clCorrect(m_document->getNumClassValues(),0),clWrong(m_document->getNumClassValues(),0);
std::vector<double> probs(2,0);
for(size_t i = 0; i < m_evaluation->getNumTestingInstances(); i++) {
unsigned int vote = m_votes[2*i] > m_votes[2*i+1] ? 0 : 1;
probs[0] = m_votes[2*i];
probs[1] = m_votes[2*i+1];
if(vote == m_classSetTest[i]){
++clCorrect[m_classSetTest[i]];
truePositive;
++correct;
}
else{
++clWrong[m_classSetTest[i]];
++wrong;
}
rankingcl1[double(probs[0])/double(probs[0]+probs[1])].push_back((0 == m_classSetTest[i]));
rankingcl2[double(probs[1])/double(probs[0]+probs[1])].push_back((1 == m_classSetTest[i]));
}
double auc = (m_evaluation->calculateAUC(rankingcl1)+m_evaluation->calculateAUC(rankingcl2))/2.0;
m_outputStream <<
" Time used for building trees: " << m_buildTimer << "s\r\n" <<
" Time used for evaluation of trees: " << m_testTimer << "s\r\n";
m_outputStream <<
"\r\n ";
std::vector<std::vector<unsigned int>> confusMatrix(m_document->getNumClassValues(),std::vector<unsigned int>(m_document->getNumClassValues(),0));
for(unsigned int i=0; i<m_document->getNumClassValues(); ++i){
for(unsigned int j=0; j<m_document->getNumClassValues(); ++j){
if(i == j)
confusMatrix[i][j] = clCorrect[i];
else
confusMatrix[i][j] = clWrong[i];
}
}
for(unsigned int i=0; i<m_document->getNumClassValues(); ++i){
m_outputStream << i << " ";
}
for(unsigned int i=0; i<m_document->getNumClassValues(); ++i){
m_outputStream << "\r\n ";
for(unsigned int j=0; j<m_document->getNumClassValues(); ++j){
m_outputStream << confusMatrix[i][j] << " ";
}
m_outputStream << i;
}
m_outputStream << "\r\n";
double accuracy = double(double(correct)/double(wrong+correct))*100;
m_outputStream <<
"\r\n " << "Accuracy: " << accuracy << "%\r\n";
PROCESS_MEMORY_COUNTERS pmc;
GetProcessMemoryInfo(GetCurrentProcess(), &pmc, sizeof(pmc));
size_t memUsageCPU = pmc.WorkingSetSize;
m_resultWriter->addKeyValue("accuracy",accuracy);
m_resultWriter->addKeyValue("cl1Correct",clCorrect[0]);
m_resultWriter->addKeyValue("cl1Wrong",clWrong[0]);
m_resultWriter->addKeyValue("cl2Correct",clCorrect[1]);
m_resultWriter->addKeyValue("cl2Wrong",clWrong[1]);
m_resultWriter->addKeyValue("trainingTime",m_buildTimer);
m_resultWriter->addKeyValue("testingTime",m_testTimer);
m_resultWriter->addKeyValue("totalTime",m_testTimer+m_buildTimer);
m_resultWriter->addKeyValue("testingInstances",m_evaluation->getNumTestingInstances());
m_resultWriter->addKeyValue("trainingInstances",m_evaluation->getNumTrainingInstances());
m_resultWriter->addKeyValue("auc",auc);
m_resultWriter->addKeyValue("memUsageCPU",double(memUsageCPU)/1024.0/1024.0);
}