//____________________________________
void DoHypothesisTest(RooWorkspace* wks){


  // Use a RooStats ProfileLikleihoodCalculator to do the hypothesis test.
  ModelConfig model;
  model.SetWorkspace(*wks);
  model.SetPdf("model");

  //plc.SetData("data");

  ProfileLikelihoodCalculator plc;
  plc.SetData( *(wks->data("data") ));

  // here we explicitly set the value of the parameters for the null.
  // We want no signal contribution, eg. mu = 0
  RooRealVar* mu = wks->var("mu");
//   RooArgSet* nullParams = new RooArgSet("nullParams");
//   nullParams->addClone(*mu);
  RooArgSet poi(*mu);
  RooArgSet * nullParams = (RooArgSet*) poi.snapshot();
  nullParams->setRealValue("mu",0);


  //plc.SetNullParameters(*nullParams);
  plc.SetModel(model);
  // NOTE: using snapshot will import nullparams
  // in the WS and merge with existing "mu"
  // model.SetSnapshot(*nullParams);

  //use instead setNuisanceParameters
  plc.SetNullParameters( *nullParams);



  // We get a HypoTestResult out of the calculator, and we can query it.
  HypoTestResult* htr = plc.GetHypoTest();
  cout << "-------------------------------------------------" << endl;
  cout << "The p-value for the null is " << htr->NullPValue() << endl;
  cout << "Corresponding to a signifcance of " << htr->Significance() << endl;
  cout << "-------------------------------------------------\n\n" << endl;


}
std::pair<float,float> ComputeLimitForADataset(float m0, RooDataSet* CurrentDataset, REGION region, REGION NonRegion, TString& modelName, RooWorkspace *ws, const char* tag) {
  
  ws->var("m0")->setVal(m0);
  ws->var("m0")->setConstant(1); 
  m0 = float(ws->var("m0")->getVal());
  
  RooRealVar *mu = ws->var(Concatenate("nSig",GetRegion(region)));
  RooArgSet *poi = new RooArgSet(*mu);
  RooArgSet *nullParams = (RooArgSet*) poi->snapshot();
  nullParams->setRealValue(Concatenate("nSig",GetRegion(region)), 0);
  
  RooStats::ModelConfig *model = new RooStats::ModelConfig();
  model->SetWorkspace(*ws);
  model->SetPdf(*ws->pdf(modelName));
  model->SetParametersOfInterest(*mu);
  model->SetObservables(RooArgSet(*ws->var("inv")));
  model->SetSnapshot(*mu);
  
  RooStats::ModelConfig *nullModel;
  nullModel = model->Clone(modelName+"BgOnly");
  float oldval = ws->var(Concatenate("nSig",GetRegion(region)))->getVal();
  ws->var(Concatenate("nSig",GetRegion(region)))->setVal(0);
  ws->var(Concatenate("nSig",GetRegion(region)))->setConstant(1);
  nullModel->SetSnapshot(RooArgSet(*ws->var(Concatenate("nSig",GetRegion(region)))));
  ws->var(Concatenate("nSig",GetRegion(region)))->setConstant(0);
  ws->var(Concatenate("nSig",GetRegion(region)))->setVal(oldval);
  nullModel->SetWorkspace(*ws);
  nullModel->SetParametersOfInterest(*nullParams);
  
  RooAbsData *data = CurrentDataset;
  
  
  float UpperLimit,Signif;
  ComputeUpperLimit(data,model,UpperLimit,Signif,mu,nullParams,ws,region,tag);
  
  delete poi;
  poi=0;
  delete model;
  model=0;
  
  return make_pair(UpperLimit,Signif);
}
double RunHypoTest(char *smwwFileName, char *ttbarFileName, char *wp3jetsFileName, char *wp4jetsFileName, char *opsFileName, char *outputFileName, double lambda) {
    TFile *smwwFile = new TFile(smwwFileName);
    TFile *ttbarFile = new TFile(ttbarFileName);
    TFile *wp3jetsFile = new TFile(wp3jetsFileName);
    TFile *wp4jetsFile = new TFile(wp4jetsFileName);
    TFile *opsFile = new TFile(opsFileName);

    TFile *outputFile = new TFile(outputFileName, "UPDATE");

    TH1F *smww = (TH1F*)smwwFile->Get(WW_MASS_HISTOGRAM_NAME);
    TH1F *ttbar = (TH1F*)ttbarFile->Get(WW_MASS_HISTOGRAM_NAME);
    TH1F *wp3jets = (TH1F*)wp3jetsFile->Get(WW_MASS_HISTOGRAM_NAME);
    TH1F *wp4jets = (TH1F*)wp4jetsFile->Get(WW_MASS_HISTOGRAM_NAME);

    //Histogram of ww-scattering with effective operator contributions
    TH1F *ops = (TH1F*)opsFile->Get(WW_MASS_HISTOGRAM_NAME);

    RooRealVar *mww = new RooRealVar("mww", "M_{WW}", 600, 2500, "GeV");

    RooDataHist smData("smData", "smData", RooArgList(*mww), smww);
    RooDataHist opsData("opsData", "opsData", RooArgList(*mww), ops);
    RooDataHist ttbarData("ttbarData", "ttbarData", RooArgList(*mww), ttbar);
    RooDataHist wp3jetsData("wp3jetsData", "wp3jetsData", RooArgList(*mww), wp3jets);
    RooDataHist wp4jetsData("wp4jetsData", "wp4jetsData", RooArgList(*mww), wp4jets);


    /*
    RooAbsPdf *opsModel;
    if (lambda == 400) {

        opsModel = SpecialCaseModel(&opsData, mww, (char*)"ops");
    }
    else {
        opsModel = MakeModel(&opsData, mww, (char*)"ops");
    }*/
    RooAbsPdf *opsModel = MakeModel(&opsData, mww, (char*)"ops");
    //RooPlot *xframe = mww->frame();
    //opsData.plotOn(xframe);
    //opsModel->plotOn(xframe);
    //printf("Chi-squared for lambda = %f: = %f\n", lambda, xframe->chiSquare("opsModel", "opsData", 3));


    RooAbsPdf *smModel = MakeModelNoSignal(&smData, mww, (char*)"sm");

    RooAbsPdf *ttbarModel = MakeModelNoSignal(&ttbarData, mww, (char*)"ttbar");
    RooAbsPdf *wp3jetsModel = MakeModelNoSignal(&wp3jetsData, mww, (char*)"wp3jets");
    RooAbsPdf *wp4jetsModel = MakeModelNoSignal(&wp4jetsData, mww, (char*)"wp4jets");

    TCanvas *canvas = new TCanvas(opsFileName);
    RooPlot *frame = mww->frame();
    frame->SetTitle("");
    //smData.plotOn(frame, RooFit::LineColor(kBlack), RooFit::Name("smData"));

    //smModel->plotOn(frame, RooFit::LineColor(kBlue), RooFit::Name("smModel"));
    //ttbarModel->plotOn(frame, RooFit::LineColor(kRed), RooFit::Name("ttbarModel"));
    //wp3jetsModel->plotOn(frame, RooFit::LineColor(kYellow), RooFit::Name("wpjetsModel"));
    opsData.plotOn(frame);
    opsModel->plotOn(frame, RooFit::LineColor(kBlue), RooFit::Name("opsModel"));
    //leg->AddEntry(frame->findObject("smModel"), "SM Model", "lep");
    //leg->AddEntry(frame->findObject("ttbarModel"), "TTBar Model", "lep");
    //leg->AddEntry(frame->findObject("wp3jetsModel"), "WP3Jets Model", "lep");
    //leg->AddEntry(frame->findObject("opsModel"), "Effective Operator Model", "lep");

    frame->Draw();
    canvas->Write();

    Double_t ww_x = WW_CROSS_SECTION * smww->GetEntries();
    Double_t ttbar_x = TTBAR_CROSS_SECTION * ttbar->GetEntries();
    Double_t wp3jets_x = WP3JETS_CROSS_SECTION * wp3jets->GetEntries();
    Double_t wp4jets_x = WP4JETS_CROSS_SECTION * wp4jets->GetEntries();


    Double_t ttbar_weight = ttbar_x/(ttbar_x + wp3jets_x + wp4jets_x + ww_x);
    Double_t wp3jets_weight = wp3jets_x/(wp3jets_x + ttbar_x + ww_x);
    Double_t wp4jets_weight = wp4jets_x/(wp4jets_x + ttbar_x + ww_x);

    RooRealVar *ttbarWeight = new RooRealVar("ttbarWeight", "ttbarWeight", 0.0, 1.0, ttbar_weight);
    RooRealVar *wp3jetsWeight = new RooRealVar("wp3jetsWeight", "wp3jetsWeight", 0.0, 1.0, wp3jets_weight);
    RooRealVar *wp4jetsWeight = new RooRealVar("wp4jetsWeight", "wp4jetsWeight", 0.0, 1.0, wp4jets_weight);

    ttbarWeight->setConstant();
    wp3jetsWeight->setConstant();
    wp4jetsWeight->setConstant();

    RooRealVar *mu = new RooRealVar("mu", "mu", 0.0, 1.0, "");
    RooAddPdf *wwModel = new RooAddPdf("wwModel", "u*effective_ww + (1-u)*SM_WW", 
            RooArgList(*opsModel, *smModel), RooArgList(*mu), kTRUE);

    RooAddPdf *model = new RooAddPdf("model", "Full model", 
            RooArgList(*ttbarModel, *wp3jetsModel, *wp4jetsModel, *wwModel), 
            RooArgList(*ttbarWeight, *wp3jetsWeight, *wp4jetsWeight), kTRUE);

    //Generate data under the alternate hypothesis
    mu->setVal(1.0);
    int nTestSetEvents = WW_CROSS_SECTION * TOTAL_INTEGRATED_LUMINOSITY;
    RooAbsData *generatedData = model->generate(*mww, nTestSetEvents);

    TCanvas *canvas2 = new TCanvas("CombinedModels");
    RooPlot *frame2 = mww->frame();
    //wwModel->plotOn(frame2, RooFit::LineColor(kRed), RooFit::Name("wwModel"));
    //generatedData->plotOn(frame2);
    mu->setVal(0.0);
    model->plotOn(frame2, RooFit::LineColor(kBlue), RooFit::Name("nullModel"));
    mu->setVal(1.0);
    model->plotOn(frame2, RooFit::LineColor(kRed), RooFit::Name("altModel"));
    TLegend *leg2 = new TLegend(0.65,0.73,0.86,0.87);
    //leg->AddEntry(frame2->findObject("wwModel"), "SM WW Scattering model with background",
    //        "lep");
    leg2->AddEntry(frame2->findObject("nullModel"), 
            "SM + Background", "lep");
    leg2->AddEntry(frame2->findObject("altModel"), 
            "Effective Operator + Background", "lep");
    frame2->SetTitle("");
    frame2->GetXaxis()->SetTitle("M_{WW} (GeV)");
    frame2->GetYaxis()->SetTitle("");
    frame2->Draw();
    leg2->Draw();
    canvas2->Write();
    outputFile->Close();

    
    RooArgSet poi(*mu);
    RooArgSet *nullParams = (RooArgSet*) poi.snapshot(); 

    nullParams->setRealValue("mu", 0.0); 

    RooStats::ProfileLikelihoodCalculator plc(*generatedData, *model, poi, 0.05, nullParams);


    RooStats::HypoTestResult* htr = plc.GetHypoTest();
    std::cerr << "P Value = " << htr->NullPValue() << "\n";
    return htr->Significance();
}