TEUCHOS_UNIT_TEST(tIterativePreconditionerFactory, inverse_test)
{
// build global (or serial communicator)
#ifdef HAVE_MPI
Epetra_MpiComm Comm(MPI_COMM_WORLD);
#else
Epetra_SerialComm Comm;
#endif
Teko::LinearOp A = build2x2(Comm,1,2,3,4);
RCP<Teko::InverseLibrary> invLib = Teko::InverseLibrary::buildFromStratimikos();
RCP<Teko::InverseFactory> invFact = invLib->getInverseFactory("Amesos");
Teko::LinearOp iP = Teko::buildInverse(*invFact,A);
Thyra::LinearOpTester<double> tester;
tester.dump_all(true);
tester.show_all_tests(true);
{
RCP<Teko::InverseFactory> precOpFact = rcp(new Teko::StaticOpInverseFactory(iP));
RCP<Teko::IterativePreconditionerFactory> precFact = rcp(new Teko::IterativePreconditionerFactory(9,precOpFact));
RCP<Teko::InverseFactory> invFact = rcp(new Teko::PreconditionerInverseFactory(precFact,Teuchos::null));
Teko::LinearOp prec = Teko::buildInverse(*invFact,A);
const bool result = tester.compare( *prec, *iP, Teuchos::ptrFromRef(out));
if (!result) {
out << "Apply 0: FAILURE" << std::endl;
success = false;
}
else
out << "Apply 0: SUCCESS" << std::endl;
}
}
bool tLumping::test_invLumping(int verbosity,std::ostream & os)
{
bool status = false;
bool allPassed = true;
Thyra::LinearOpTester<double> tester;
tester.show_all_tests(true);
tester.set_all_error_tol(tolerance_);
Epetra_Map map(100,0,*GetComm());
// A matrix...to be lumped
Epetra_CrsMatrix A(Copy,map,5,false);
int indices[5];
double values[5] = {1,2,3,4,5};
for(int i=0;i<A.NumMyRows()-5;i++) {
int index = A.RowMap().GID(i);
for(int j=0;j<5;j++)
indices[j] = A.RowMap().GID(i+j);
A.InsertGlobalValues(index,5,values,indices);
}
for(int i=A.NumMyRows()-5;i<A.NumMyRows();i++) {
int index = A.RowMap().GID(i);
for(int j=0;j<5;j++)
indices[j] = A.RowMap().GID(j);
A.InsertGlobalValues(index,5,values,indices);
}
A.FillComplete();
// B matrix...already lumped
Epetra_CrsMatrix B(Copy,map,1,true);
double number = 1.0/15.0;
for(int i=0;i<B.NumMyRows();i++) {
int index = B.RowMap().GID(i);
B.InsertGlobalValues(index,1,&number,&index);
}
B.FillComplete();
Teko::LinearOp pA = Thyra::epetraLinearOp(rcpFromRef(A));
Teko::LinearOp pB = Thyra::epetraLinearOp(rcpFromRef(B));
Teko::LinearOp lumpedA = getInvLumpedMatrix(pA);
{
std::stringstream ss;
Teuchos::FancyOStream fos(rcpFromRef(ss)," |||");
const bool result = tester.compare( *pB, *lumpedA, Teuchos::ptrFromRef(fos) );
TEST_ASSERT(result,
std::endl << " tLummping::test_invLumping "
<< ": Testing basic inv lumping functionality");
if(not result || verbosity>=10)
os << ss.str();
}
return allPassed;
}
TEUCHOS_UNIT_TEST(tLU2x2InverseOp, exact_test_tpetra)
{
Kokkos::initialize();
// build global (or serial communicator)
RCP<const Teuchos::Comm<int> > Comm = Tpetra::DefaultPlatform::getDefaultPlatform ().getComm ();
Teko::LinearOp A_00 = build2x2(Comm,1,2,3,4);
Teko::LinearOp A_01 = build2x2(Comm,5,6,7,8);
Teko::LinearOp A_02 = build2x2(Comm,9,10,11,12);
Teko::LinearOp A_10 = build2x2(Comm,9,10,11,12);
Teko::LinearOp A_11 = build2x2(Comm,-13,-14,-15,-16);
Teko::LinearOp A_12 = build2x2(Comm,-1,-4,-5,-6);
Teko::LinearOp A_20 = build2x2(Comm,-9,-10,-11,-12);
Teko::LinearOp A_21 = build2x2(Comm,13,14,15,16);
Teko::LinearOp A_22 = build2x2(Comm,1,4,5,6);
Teko::BlockedLinearOp A = Teko::createBlockedOp();
Teko::beginBlockFill(A,3,3);
Teko::setBlock(0,0,A,A_00);
Teko::setBlock(0,1,A,A_01);
Teko::setBlock(0,2,A,A_02);
Teko::setBlock(1,0,A,A_10);
Teko::setBlock(1,1,A,A_11);
Teko::setBlock(1,2,A,A_12);
Teko::setBlock(2,0,A,A_20);
Teko::setBlock(2,1,A,A_21);
Teko::setBlock(2,2,A,A_22);
Teko::endBlockFill(A);
std::string reorderType = "[ [0 1] 2]";
Teuchos::RCP<const Teko::BlockReorderManager> brm = Teko::blockedReorderFromString(reorderType);
Teko::ModifiableLinearOp re_A = Teuchos::rcp_const_cast<Thyra::LinearOpBase<double> >(Teko::buildReorderedLinearOp(*brm,A));
Teko::ModifiableLinearOp final_A = Teuchos::rcp(new Teko::ReorderedLinearOp(brm,re_A));
Thyra::LinearOpTester<double> tester;
tester.dump_all(true);
tester.show_all_tests(true);
{
const bool result = tester.compare( *final_A, *A, Teuchos::ptrFromRef(out));
if (!result) {
out << "Apply: FAILURE" << std::endl;
success = false;
}
else
out << "Apply: SUCCESS" << std::endl;
}
Kokkos::finalize();
}
TEUCHOS_UNIT_TEST(tIterativePreconditionerFactory, constructor_test)
{
// build global (or serial communicator)
#ifdef HAVE_MPI
Epetra_MpiComm Comm(MPI_COMM_WORLD);
#else
Epetra_SerialComm Comm;
#endif
Teko::LinearOp A = build2x2(Comm,1,2,3,4);
Teko::LinearOp iP = build2x2(Comm,1.0,0.0,0.0,1.0/4.0);
Teko::LinearOp ImAiP = build2x2(Comm,0.0,-0.5,-3.0,0.0);
Teko::LinearOp I = Thyra::identity(ImAiP->range());
Thyra::LinearOpTester<double> tester;
tester.show_all_tests(true);
{
RCP<Teko::InverseFactory> precOpFact = rcp(new Teko::StaticOpInverseFactory(iP));
RCP<Teko::IterativePreconditionerFactory> precFact = rcp(new Teko::IterativePreconditionerFactory(0,precOpFact));
RCP<Teko::InverseFactory> invFact = rcp(new Teko::PreconditionerInverseFactory(precFact,Teuchos::null));
Teko::LinearOp prec = Teko::buildInverse(*invFact,A);
const bool result = tester.compare( *prec, *iP, Teuchos::ptrFromRef(out));
if (!result) {
out << "Apply 0: FAILURE" << std::endl;
success = false;
}
else
out << "Apply 0: SUCCESS" << std::endl;
}
{
using Teko::multiply;
RCP<Teko::InverseFactory> precOpFact = rcp(new Teko::StaticOpInverseFactory(iP));
RCP<Teko::IterativePreconditionerFactory> precFact = rcp(new Teko::IterativePreconditionerFactory(2,precOpFact));
RCP<Teko::InverseFactory> invFact = rcp(new Teko::PreconditionerInverseFactory(precFact,Teuchos::null));
Teko::LinearOp prec = Teko::buildInverse(*invFact,A);
Teko::LinearOp exact = Teko::multiply(iP,Teko::add(I,Teko::multiply(Teko::add(I,ImAiP),ImAiP))); // iP*(I+(I+X)*X)
const bool result = tester.compare( *prec, *exact, Teuchos::ptrFromRef(out));
if (!result) {
out << "Apply 2: FAILURE" << std::endl;
success = false;
}
else
out << "Apply 2: SUCCESS" << std::endl;
}
}
TEUCHOS_UNIT_TEST(tStratimikosFactory, test_Defaults)
{
using Teuchos::RCP;
using Teuchos::ParameterList;
// build global (or serial communicator)
#ifdef HAVE_MPI
Epetra_MpiComm comm(MPI_COMM_WORLD);
#else
Epetra_SerialComm comm;
#endif
// build epetra operator
RCP<Epetra_Operator> eA = buildSystem(comm,5);
RCP<Thyra::LinearOpBase<double> > tA = Thyra::nonconstEpetraLinearOp(eA);
// build stratimikos factory, adding Teko's version
Stratimikos::DefaultLinearSolverBuilder stratFactory;
stratFactory.setPreconditioningStrategyFactory(
Teuchos::abstractFactoryStd<Thyra::PreconditionerFactoryBase<double>,Teko::StratimikosFactory>(),
"Teko");
RCP<const ParameterList> validParams = stratFactory.getValidParameters();
stratFactory.setParameterList(Teuchos::rcp(new Teuchos::ParameterList(*validParams)));
// print out Teko's parameter list and fail if it doesn't exist!
TEST_NOTHROW(validParams->sublist("Preconditioner Types").sublist("Teko").print(out,
ParameterList::PrintOptions().showDoc(true).indent(2).showTypes(true)));
// build teko preconditioner factory
RCP<Thyra::PreconditionerFactoryBase<double> > precFactory
= stratFactory.createPreconditioningStrategy("Teko");
// make sure factory is built
TEST_ASSERT(precFactory!=Teuchos::null);
// build preconditioner
RCP<Thyra::PreconditionerBase<double> > prec = Thyra::prec<double>(*precFactory,tA);
TEST_ASSERT(prec!=Teuchos::null);
// build an operator to test against
RCP<const Teko::InverseLibrary> invLib = Teko::InverseLibrary::buildFromStratimikos();
RCP<const Teko::InverseFactory> invFact = invLib->getInverseFactory("Amesos");
Teko::LinearOp testOp = Teko::buildInverse(*invFact,tA);
Teko::LinearOp precOp = prec->getUnspecifiedPrecOp();
TEST_ASSERT(precOp!=Teuchos::null);
Thyra::LinearOpTester<double> tester;
tester.show_all_tests(true);
tester.set_all_error_tol(0);
TEST_ASSERT(tester.compare(*precOp,*testOp,Teuchos::ptrFromRef(out)));
}
TEUCHOS_UNIT_TEST(tLU2x2InverseOp, exact_test)
{
// build global (or serial communicator)
#ifdef HAVE_MPI
Epetra_MpiComm Comm(MPI_COMM_WORLD);
#else
Epetra_SerialComm Comm;
#endif
Teko::LinearOp A_00 = build2x2(Comm,1,2,3,4);
Teko::LinearOp A_01 = build2x2(Comm,5,6,7,8);
Teko::LinearOp A_10 = build2x2(Comm,9,10,11,12);
Teko::LinearOp A_11 = build2x2(Comm,-13,-14,-15,-16);
Teko::BlockedLinearOp A = Teko::toBlockedLinearOp(Thyra::block2x2(A_00,A_01,A_10,A_11));
Teko::LinearOp S = build2x2(Comm,26.000000000000000, 28.000000000000004, 30.000000000000000, 32.000000000000000);
Teko::LinearOp iA_00 = build2x2(Comm,-1.000000000000000, 0.500000000000000, 0.749999999999998, -0.249999999999998);
Teko::LinearOp iA_01 = build2x2(Comm,-3.000000000000004, 2.500000000000003, 2.750000000000008, -2.250000000000007);
Teko::LinearOp iA_10 = build2x2(Comm,-1.999999999999999, 1.499999999999999, 1.749999999999999, -1.249999999999999);
Teko::LinearOp iA_11 = build2x2(Comm, 4.000000000000001, -3.500000000000001, -3.750000000000001, 3.250000000000001);
Teko::LinearOp iA = Thyra::block2x2(iA_00,iA_01,iA_10,iA_11);
Thyra::LinearOpTester<double> tester;
tester.dump_all(true);
tester.show_all_tests(true);
{
RCP<Teko::InverseLibrary> invLib = Teko::InverseLibrary::buildFromStratimikos();
RCP<Teko::InverseFactory> invFact = invLib->getInverseFactory("Amesos");
Teko::LinearOp invA_00 = Teko::buildInverse(*invFact,A_00);
Teko::LinearOp invS = Teko::buildInverse(*invFact,S);
Teko::LinearOp invA = Teko::createLU2x2InverseOp(A,invA_00,invA_00,invS,"Approximation");
const bool result = tester.compare( *invA, *iA, &out);
if (!result) {
out << "Apply: FAILURE" << std::endl;
success = false;
}
else
out << "Apply: SUCCESS" << std::endl;
}
}
TEUCHOS_UNIT_TEST(tProbingFactory, invlib_constr)
{
// build global (or serial communicator)
#ifdef HAVE_MPI
Epetra_MpiComm Comm(MPI_COMM_WORLD);
#else
Epetra_SerialComm Comm;
#endif
Teko::LinearOp lo = buildSystem(Comm,10);
Teuchos::ParameterList subList;
subList.set("Type","Probing Preconditioner");
subList.set("Inverse Type","Amesos");
subList.set("Probing Graph Operator",lo);
Teuchos::ParameterList pl;
pl.set("Prober",subList);
Teuchos::RCP<Teko::InverseLibrary> invLib = Teko::InverseLibrary::buildFromParameterList(pl);
Teuchos::RCP<Teko::InverseFactory> proberFactory = invLib->getInverseFactory("Prober");
Teuchos::RCP<Teko::InverseFactory> directSolveFactory = invLib->getInverseFactory("Amesos");
{
Teko::LinearOp probedInverse = Teko::buildInverse(*proberFactory,lo);
Teko::LinearOp invLo = Teko::buildInverse(*directSolveFactory,lo);
Thyra::LinearOpTester<double> tester;
tester.dump_all(true);
tester.show_all_tests(true);
{
const bool result = tester.compare( *probedInverse, *invLo, &out);
if (!result) {
out << "Apply: FAILURE" << std::endl;
success = false;
}
else
out << "Apply: SUCCESS" << std::endl;
}
}
}
TEUCHOS_UNIT_TEST(tDiagonalPreconditionerFactory, diag_inv_test)
{
using Teuchos::RCP;
// build global (or serial communicator)
#ifdef HAVE_MPI
Epetra_MpiComm Comm(MPI_COMM_WORLD);
#else
Epetra_SerialComm Comm;
#endif
// preconditioners to test
std::string precName[] = {"AbsRowSum","Diagonal","Lumped"};
int numPrec = 3;
RCP<Teuchos::ParameterList> pl = buildLibPL(4);
RCP<Teko::InverseLibrary> invLib = Teko::InverseLibrary::buildFromParameterList(*pl);
Teko::LinearOp A = buildSystem(Comm,20);
for(int i=0;i<numPrec;i++) {
RCP<Teko::InverseFactory> invFact = invLib->getInverseFactory(precName[i]);
Teko::LinearOp idA_fact = Teko::buildInverse(*invFact,A);
Teko::LinearOp idA_drct = Teko::getInvDiagonalOp(A,Teko::getDiagonalType(precName[i]));
Thyra::LinearOpTester<double> tester;
tester.show_all_tests(true);
const bool result = tester.compare( *idA_fact, *idA_drct, Teuchos::ptrFromRef(out));
if (!result) {
out << "Apply 0: FAILURE (\"" << precName[i] << "\")" << std::endl;
success = false;
}
else
out << "Apply 0: SUCCESS (\"" << precName[i] << "\")" << std::endl;
// test type
Teko::LinearOp srcOp = Teko::extractOperatorFromPrecOp(idA_fact);
TEST_ASSERT(Teuchos::rcp_dynamic_cast<const Thyra::DiagonalLinearOpBase<double> >(srcOp)!=Teuchos::null);
}
}
bool tBlockLowerTriInverseOp_tpetra::test_apply(int verbosity,std::ostream & os)
{
bool status = false;
bool allPassed = true;
RCP<Thyra::PhysicallyBlockedLinearOpBase<ST> > U = getLowerTriBlocks(A_);
RCP<const Thyra::LinearOpBase<ST> > invTri = createBlockLowerTriInverseOp(U,invDiag_);
Thyra::LinearOpTester<ST> tester;
tester.show_all_tests(true);
std::stringstream ss;
Teuchos::FancyOStream fos(Teuchos::rcpFromRef(ss)," |||");
const bool result = tester.compare( *invA_, *invTri, Teuchos::ptrFromRef(fos) );
TEST_ASSERT(result,
std::endl << " tBlockLowerTriInverseOp_tpetra::test_apply "
<< ": Comparing implicitly generated operator to exact operator");
if(not result || verbosity>=10)
os << ss.str();
return allPassed;
}
TEUCHOS_UNIT_TEST(assembly_engine, z_basic_epetra_vtpetra)
{
TEUCHOS_ASSERT(tLinearOp!=Teuchos::null);
TEUCHOS_ASSERT(eLinearOp!=Teuchos::null);
TEUCHOS_ASSERT(tVector!=Teuchos::null);
TEUCHOS_ASSERT(eVector!=Teuchos::null);
Thyra::LinearOpTester<double> tester;
tester.set_all_error_tol(1e-14);
tester.show_all_tests(true);
tester.dump_all(true);
tester.num_random_vectors(200);
{
const bool result = tester.compare( *tLinearOp, *eLinearOp, Teuchos::ptrFromRef(out) );
TEST_ASSERT(result);
}
{
const bool result = Thyra::testRelNormDiffErr(
"Tpetra",*tVector,
"Epetra",*eVector,
"linear_properties_error_tol()", 1e-14,
"linear_properties_warning_tol()", 1e-14,
&out);
TEST_ASSERT(result);
}
}
bool tNeumannSeries::test_scaledOp(int verbosity,std::ostream & os)
{
bool status = false;
bool allPassed = true;
// perform actual test
Thyra::LinearOpTester<double> tester;
tester.show_all_tests(true);
std::stringstream ss;
Teuchos::FancyOStream fos(rcpFromRef(ss)," |||");
{
// build library parameter list
Teuchos::RCP<Teuchos::ParameterList> pl = buildLibPL(2,"Diagonal");
if(verbosity>=10) {
os << " tNeumannSeries::test_scaledOp :"
<< " printing library parameter list" << std::endl;
pl->print(os);
}
RCP<Teko::InverseLibrary> invLib = Teko::InverseLibrary::buildFromParameterList(*pl);
RCP<Teko::InverseFactory> neumann = invLib->getInverseFactory("Neumann");
RCP<Teko::InverseFactory> direct = invLib->getInverseFactory("Amesos");
Teko::LinearOp op = buildExampleOp(2,*GetComm());
Teko::LinearOp neuInv = Teko::buildInverse(*neumann,op);
Teko::LinearOp dirInv = Teko::buildInverse(*direct,op);
const bool result = tester.compare( *neuInv, *dirInv, Teuchos::ptrFromRef(fos) );
TEST_ASSERT(result,
std::endl << " tNeumannSeries::test_scaledOp "
<< ": Comparing factory generated operator to correct operator");
if(not result || verbosity>=10)
os << ss.str();
}
return allPassed;
}
TEUCHOS_UNIT_TEST_TEMPLATE_1_DECL( SimpleDenseLinearOp, basic,
Scalar )
{
using Teuchos::rcp_dynamic_cast;
typedef ScalarTraits<Scalar> ST;
const RCP<MultiVectorBase<Scalar> > mv =
createSerialMultiVector<Scalar>(g_dim, g_dim/2, ST::one());
const RCP<LinearOpBase<Scalar> > op =
createNonconstSimpleDenseLinearOp<Scalar>(mv);
TEST_EQUALITY(
mv,
rcp_dynamic_cast<SimpleDenseLinearOp<Scalar> >(op)->getNonconstMultiVector()
);
Thyra::LinearOpTester<Scalar> linearOpTester;
linearOpTester.dump_all(g_dumpAll);
TEST_ASSERT(linearOpTester.check(*op, ptrFromRef(out)));
}
TEUCHOS_UNIT_TEST(tProbingFactory, basic_test)
{
// build global (or serial communicator)
#ifdef HAVE_MPI
Epetra_MpiComm Comm(MPI_COMM_WORLD);
#else
Epetra_SerialComm Comm;
#endif
Teko::LinearOp lo = buildSystem(Comm,10);
Teuchos::RCP<Teko::InverseLibrary> invLib = Teko::InverseLibrary::buildFromStratimikos();
Teuchos::RCP<Teko::InverseFactory> directSolveFactory = invLib->getInverseFactory("Amesos");
Teuchos::RCP<Teko::ProbingPreconditionerFactory> probeFact
= rcp(new Teko::ProbingPreconditionerFactory);
probeFact->setGraphOperator(lo);
probeFact->setInverseFactory(directSolveFactory);
RCP<Teko::InverseFactory> invFact = Teuchos::rcp(new Teko::PreconditionerInverseFactory(probeFact,Teuchos::null));
Teko::LinearOp probedInverse = Teko::buildInverse(*invFact,lo);
Teko::LinearOp invLo = Teko::buildInverse(*directSolveFactory,lo);
Thyra::LinearOpTester<double> tester;
tester.dump_all(true);
tester.show_all_tests(true);
{
const bool result = tester.compare( *probedInverse, *invLo, &out);
if (!result) {
out << "Apply: FAILURE" << std::endl;
success = false;
}
else
out << "Apply: SUCCESS" << std::endl;
}
}
TEUCHOS_UNIT_TEST(tExplicitOps, transpose)
{
// build global (or serial communicator)
#ifdef HAVE_MPI
Epetra_MpiComm comm(MPI_COMM_WORLD);
#else
Epetra_SerialComm comm;
#endif
int nx = 39; // essentially random values
int ny = 53;
// create some big blocks to play with
Trilinos_Util::CrsMatrixGallery FGallery("recirc_2d",comm,false); // CJ TODO FIXME: change for Epetra64
FGallery.Set("nx",nx);
FGallery.Set("ny",ny);
Epetra_CrsMatrix & epetraF = FGallery.GetMatrixRef();
Teko::LinearOp F = Thyra::epetraLinearOp(rcp(new Epetra_CrsMatrix(epetraF)));
Teko::LinearOp F_T = Teko::explicitTranspose(F);
Teko::LinearOp aF = Thyra::adjoint(F);
Teuchos::RCP<const Epetra_Operator> eOp = Thyra::get_Epetra_Operator(*F_T);
TEST_ASSERT(eOp!=Teuchos::null);
Teuchos::RCP<const Epetra_CrsMatrix> eCrs = Teuchos::rcp_dynamic_cast<const Epetra_CrsMatrix>(eOp);
TEST_ASSERT(eCrs!=Teuchos::null);
Thyra::LinearOpTester<double> tester;
tester.set_all_error_tol(1e-14);
tester.show_all_tests(true);
{
std::stringstream ss;
const bool result = tester.compare( *aF, *F_T, Teuchos::ptrFromRef(out) );
TEST_ASSERT(result);
}
}
TEUCHOS_UNIT_TEST(assembly_engine, z_basic_epetra_vtpetra)
{
PHX::InitializeKokkosDevice();
TEUCHOS_ASSERT(tLinearOp!=Teuchos::null);
TEUCHOS_ASSERT(eLinearOp!=Teuchos::null);
TEUCHOS_ASSERT(tVector!=Teuchos::null);
TEUCHOS_ASSERT(eVector!=Teuchos::null);
Thyra::LinearOpTester<double> tester;
tester.set_all_error_tol(1e-14);
tester.show_all_tests(true);
tester.dump_all(true);
tester.num_random_vectors(200);
{
const bool result = tester.compare( *tLinearOp, *eLinearOp, Teuchos::ptrFromRef(out) );
TEST_ASSERT(result);
}
{
const bool result = Thyra::testRelNormDiffErr(
"Tpetra",*tVector,
"Epetra",*eVector,
"linear_properties_error_tol()", 1e-14,
"linear_properties_warning_tol()", 1e-14,
&out);
TEST_ASSERT(result);
}
// Need to kill global objects so that memory leaks on kokkos ref
// count pointing doesn't trigger test failure.
eLinearOp = Teuchos::null;
tLinearOp = Teuchos::null;
eVector = Teuchos::null;
tVector = Teuchos::null;
PHX::FinalizeKokkosDevice();
}
int exampleImplicitlyComposedLinearOperators(
const int n0,
const int n1,
const int n2,
Teuchos::FancyOStream &out,
const Teuchos::EVerbosityLevel verbLevel,
typename Teuchos::ScalarTraits<Scalar>::magnitudeType errorTol,
const bool testAdjoint
)
{
// Using and other declarations
typedef Teuchos::ScalarTraits<Scalar> ST;
using Teuchos::as;
using Teuchos::RCP;
using Teuchos::OSTab;
using Thyra::VectorSpaceBase;
using Thyra::VectorBase;
using Thyra::MultiVectorBase;
using Thyra::LinearOpBase;
using Thyra::defaultSpmdVectorSpace;
using Thyra::randomize;
using Thyra::identity;
using Thyra::diagonal;
using Thyra::multiply;
using Thyra::add;
using Thyra::subtract;
using Thyra::scale;
using Thyra::adjoint;
using Thyra::block1x2;
using Thyra::block2x2;
using Thyra::block2x2;
out << "\n***"
<< "\n*** Demonstrating building linear operators for scalar type "
<< ST::name()
<< "\n***\n";
OSTab tab(out);
//
// A) Set up the basic objects and other inputs to build the implicitly
// composed linear operators.
//
// Create serial vector spaces in this case
const RCP<const VectorSpaceBase<Scalar> >
space0 = defaultSpmdVectorSpace<Scalar>(n0),
space1 = defaultSpmdVectorSpace<Scalar>(n1),
space2 = defaultSpmdVectorSpace<Scalar>(n2);
// Create the component linear operators first as multi-vectors
const RCP<MultiVectorBase<Scalar> >
mvA = createMembers(space2, n0, "A"),
mvB = createMembers(space0, n2, "B"),
mvC = createMembers(space0, n0, "C"),
mvE = createMembers(space0, n1, "E"),
mvF = createMembers(space0, n1, "F"),
mvJ = createMembers(space2, n1, "J"),
mvK = createMembers(space1, n2, "K"),
mvL = createMembers(space2, n1, "L"),
mvN = createMembers(space0, n1, "N"),
mvP = createMembers(space2, n1, "P"),
mvQ = createMembers(space0, n2, "Q");
// Create the vector diagonal for D
const RCP<VectorBase<Scalar> > d = createMember(space2);
// Get the constants
const Scalar
one = 1.0,
beta = 2.0,
gamma = 3.0,
eta = 4.0;
// Randomize the values in the Multi-Vector
randomize( -one, +one, mvA.ptr() );
randomize( -one, +one, mvB.ptr() );
randomize( -one, +one, mvC.ptr() );
randomize( -one, +one, d.ptr() );
randomize( -one, +one, mvE.ptr() );
randomize( -one, +one, mvF.ptr() );
randomize( -one, +one, mvJ.ptr() );
randomize( -one, +one, mvK.ptr() );
randomize( -one, +one, mvL.ptr() );
randomize( -one, +one, mvN.ptr() );
randomize( -one, +one, mvP.ptr() );
randomize( -one, +one, mvQ.ptr() );
// Get the linear operator forms of the basic component linear operators
const RCP<const LinearOpBase<Scalar> >
A = mvA,
B = mvB,
C = mvC,
E = mvE,
F = mvF,
J = mvJ,
K = mvK,
L = mvL,
N = mvN,
P = mvP,
Q = mvQ;
out << describe(*A, verbLevel);
out << describe(*B, verbLevel);
out << describe(*C, verbLevel);
out << describe(*E, verbLevel);
out << describe(*F, verbLevel);
out << describe(*J, verbLevel);
out << describe(*K, verbLevel);
out << describe(*L, verbLevel);
out << describe(*N, verbLevel);
out << describe(*P, verbLevel);
out << describe(*Q, verbLevel);
//
// B) Create the composed linear operators
//
// I
const RCP<const LinearOpBase<Scalar> > I = identity(space1, "I");
// D = diag(d)
const RCP<const LinearOpBase<Scalar> > D = diagonal(d, "D");
// M00 = [ gama*B*A + C, E + F ] ^H
// [ J^H * A, I ]
const RCP<const LinearOpBase<Scalar> > M00 =
adjoint(
block2x2(
add( scale(gamma,multiply(B,A)), C ), add( E, F ),
multiply(adjoint(J),A), I
),
"M00"
);
out << "\nM00 = " << describe(*M00, verbLevel);
// M01 = beta * [ Q ]
// [ K ]
const RCP<const LinearOpBase<Scalar> > M01 =
scale(
beta,
block2x1( Q, K ),
"M01"
);
out << "\nM01 = " << describe(*M01, verbLevel);
// M10 = [ L * N^H, eta*P ]
const RCP<const LinearOpBase<Scalar> > M10 =
block1x2(
multiply(L,adjoint(N)), scale(eta,P),
"M10"
);
out << "\nM10 = " << describe(*M10, verbLevel);
// M11 = D - Q^H*Q
const RCP<const LinearOpBase<Scalar> > M11 =
subtract( D, multiply(adjoint(Q),Q), "M11" );
out << "\nM11 = " << describe(*M11, verbLevel);
// M = [ M00, M01 ]
// [ M10, M11 ]
const RCP<const LinearOpBase<Scalar> > M =
block2x2(
M00, M01,
M10, M11,
"M"
);
out << "\nM = " << describe(*M, verbLevel);
//
// C) Test the final composed operator
//
Thyra::LinearOpTester<Scalar> linearOpTester;
linearOpTester.set_all_error_tol(errorTol);
linearOpTester.check_adjoint(testAdjoint);
if (as<int>(verbLevel) >= as<int>(Teuchos::VERB_HIGH))
linearOpTester.show_all_tests(true);
if (as<int>(verbLevel) >= as<int>(Teuchos::VERB_EXTREME))
linearOpTester.dump_all(true);
const bool result = linearOpTester.check(*M,&out);
return result;
}
bool tPCDStrategy::test_PCDStrategy(int verbosity,std::ostream & os)
{
bool status = false;
bool allPassed = true;
Thyra::LinearOpTester<double> tester;
tester.show_all_tests(true);
tester.set_all_error_tol(tolerance_);
Teko::LinearOp M1 = buildExampleOp(1,*GetComm(),1.0);
Teko::LinearOp M2 = buildExampleOp(2,*GetComm(),1.0);
Teko::LinearOp A = Thyra::nonconstBlock2x2<double>(buildExampleOp(2,*GetComm(),1.0),
buildExampleOp(1,*GetComm(),2.0),
buildExampleOp(1,*GetComm(),3.0),
buildExampleOp(2,*GetComm(),4.0));
Teko::BlockedLinearOp blkA = Teko::toBlockedLinearOp(A);
Teko::LinearOp laplace = Teko::explicitMultiply(M2,M1);
Teko::LinearOp Fp = M1;
Teko::LinearOp Qp = buildExampleOp(3,*GetComm(),1.0);
std::string pcdStr = Teko::NS::PCDStrategy::getPCDString();
std::string presLapStr = Teko::NS::PCDStrategy::getPressureLaplaceString();
std::string presMassStr = Teko::NS::PCDStrategy::getPressureMassString();
RCP<Teko::StaticRequestCallback<Teko::LinearOp> > pcdCb
= rcp(new Teko::StaticRequestCallback<Teko::LinearOp>(pcdStr,Fp));
RCP<Teko::StaticRequestCallback<Teko::LinearOp> > lapCb
= rcp(new Teko::StaticRequestCallback<Teko::LinearOp>(presLapStr,laplace));
RCP<Teko::StaticRequestCallback<Teko::LinearOp> > massCb
= rcp(new Teko::StaticRequestCallback<Teko::LinearOp>(presMassStr,Qp));
RCP<Teko::RequestHandler> rh = rcp(new Teko::RequestHandler);
rh->addRequestCallback(pcdCb);
rh->addRequestCallback(lapCb);
rh->addRequestCallback(massCb);
RCP<Teko::InverseLibrary> invLib = Teko::InverseLibrary::buildFromStratimikos();
RCP<Teko::InverseFactory> inverseFact = invLib->getInverseFactory("Amesos");
// test the inverse of the 00 block
{
bool result;
std::stringstream ss;
Teuchos::FancyOStream fos(Teuchos::rcpFromRef(ss)," |||");
Teko::LinearOp invA00 = inverseFact->buildInverse(M2);
Teko::BlockPreconditionerState state;
Teko::NS::PCDStrategy strategy(inverseFact,inverseFact);
strategy.setRequestHandler(rh);
// build the state object
// state.addLinearOp(presLapStr, laplace);
// state.addLinearOp(pcdStr, Fp);
// state.addLinearOp(presMassStr, Qp);
// test the 0,0 block inverses: hat
Teko::LinearOp hatInvA00 = strategy.getHatInvA00(blkA,state);
ss.str("");
result = tester.compare( *hatInvA00, *invA00, Teuchos::ptrFromRef(fos) );
TEST_ASSERT(result,
std::endl << " tPCDStrategy::test_PCDStrategy " << toString(status)
<< " : Comparing invHatA00 operators");
if(not result || verbosity>=10)
os << ss.str();
// test the 0,0 block inverses: tilde
Teko::LinearOp tildeInvA00 = strategy.getTildeInvA00(blkA,state);
ss.str("");
result = tester.compare( *tildeInvA00, *invA00, Teuchos::ptrFromRef(fos) );
TEST_ASSERT(result,
std::endl << " tPCDStrategy::test_PCDStrategy " << toString(status)
<< " : Comparing invTildeA00 operators");
if(not result || verbosity>=10)
os << ss.str();
}
// test the inverse of the Schur complement
{
bool result;
std::stringstream ss;
Teuchos::FancyOStream fos(Teuchos::rcpFromRef(ss)," |||");
Teko::LinearOp invLaplace = inverseFact->buildInverse(laplace);
Teko::LinearOp iQp = Teko::getInvDiagonalOp(Qp);
Teko::LinearOp invSchur = multiply(iQp,Fp,invLaplace);
Teko::BlockPreconditionerState state;
Teko::NS::PCDStrategy strategy(inverseFact,inverseFact);
strategy.setRequestHandler(rh);
// build the state object
// state.addLinearOp(presLapStr, laplace);
// state.addLinearOp(pcdStr, Fp);
// state.addLinearOp(presMassStr, Qp);
// test the 0,0 block inverses: hat
Teko::LinearOp invS_strategy = strategy.getInvS(blkA,state);
ss.str("");
result = tester.compare( *invS_strategy, *invSchur, Teuchos::ptrFromRef(fos) );
TEST_ASSERT(result,
std::endl << " tPCDStrategy::test_PCDStrategy " << toString(status)
<< " : Comparing invS operators");
if(not result || verbosity>=10)
os << ss.str();
}
return allPassed;
}
bool runCgSolveExample(
const int dim,
const Scalar diagScale,
const bool symOp,
const bool showAllTests,
const typename Teuchos::ScalarTraits<Scalar>::magnitudeType tolerance,
const int maxNumIters
)
{
using Teuchos::as;
using Teuchos::null;
using Teuchos::RCP;
using Teuchos::rcp;
using Teuchos::OSTab;
typedef Teuchos::ScalarTraits<Scalar> ST;
using Thyra::multiply;
using Thyra::scale;
typedef typename ST::magnitudeType ScalarMag;
bool success = true;
bool result;
Teuchos::RCP<Teuchos::FancyOStream> out =
Teuchos::VerboseObjectBase::getDefaultOStream();
*out << "\n***\n*** Running silly CG solver using scalar type = \'"
<< ST::name() << "\' ...\n***\n";
Teuchos::Time timer("");
timer.start(true);
//
// (A) Setup a simple linear system with tridiagonal operator:
//
// [ a*2 -1 ]
// [ -r(1) a*2 -1 ]
// A = [ . . . ]
// [ -r(n-2) a*2 -1 ]
// [ -r(n-1) a*2 ]
//
// (A.1) Create the tridiagonal matrix operator
*out << "\nConstructing tridiagonal matrix A of dimension = " << dim
<< " and diagonal multiplier = " << diagScale << " ...\n";
Teuchos::Array<Scalar> lower(dim-1), diag(dim), upper(dim-1);
const Scalar
up = -ST::one(),
diagTerm = as<Scalar>(2.0) * diagScale * ST::one(),
low = -(symOp ? ST::one() : ST::random());
int k = 0;
// First row
diag[k] = diagTerm; upper[k] = up;
// Middle rows
for( k = 1; k < dim - 1; ++k ) {
lower[k-1] = low; diag[k] = diagTerm; upper[k] = up;
}
// Last row
lower[k-1] = low; diag[k] = diagTerm;
RCP<const Thyra::LinearOpBase<Scalar> > A =
rcp(new ExampleTridiagSerialLinearOp<Scalar>(dim, lower, diag, upper));
// (A.2) Testing the linear operator constructed linear operator
*out << "\nTesting the constructed linear operator A ...\n";
Thyra::LinearOpTester<Scalar> linearOpTester;
linearOpTester.enable_all_tests(false);
linearOpTester.check_linear_properties(true);
linearOpTester.set_all_error_tol(tolerance);
linearOpTester.set_all_warning_tol(1e-2*tolerance);
linearOpTester.show_all_tests(showAllTests);
result = linearOpTester.check(*A, out.ptr());
if(!result) success = false;
// (A.3) Create RHS vector b and set to a random value
RCP<Thyra::VectorBase<Scalar> > b = createMember(A->range());
Thyra::seed_randomize<Scalar>(0);
Thyra::randomize( -ST::one(), +ST::one(), b.ptr() );
// (A.4) Create LHS vector x and set to zero
RCP<Thyra::VectorBase<Scalar> > x = createMember(A->domain());
Thyra::V_S( x.ptr(), ST::zero() );
// (A.5) Create the final linear system
if(!symOp) {
*out << "\nSetting up normal equations for unsymmetric system A^H*(A*x-b) => new A*x = b ...\n";
// A^H*A
RCP<const Thyra::LinearOpBase<Scalar> > AtA = multiply(adjoint(A), A);
// A^H*b
RCP<Thyra::VectorBase<Scalar> > nb = createMember(AtA->range());
Thyra::apply<Scalar>(*A, Thyra::CONJTRANS, *b, nb.ptr());
A = AtA;
b = nb;
}
// (A.6) Testing the linear operator used with the solve
*out << "\nTesting the linear operator used with the solve ...\n";
linearOpTester.check_for_symmetry(true);
result = linearOpTester.check(*A, out.ptr());
if(!result) success = false;
//
// (B) Solve the linear system with the silly CG solver
//
*out << "\nSolving the linear system with sillyCgSolve(...) ...\n";
{
OSTab tab2(out);
result = sillyCgSolve(*A, *b, maxNumIters, tolerance, x.ptr(), *out);
}
if(!result) success = false;
//
// (C) Check that the linear system was solved to the specified tolerance
//
RCP<Thyra::VectorBase<Scalar> > r = createMember(A->range());
// r = b
Thyra::V_V(r.ptr(), *b);
// r = -A*x + r
Thyra::apply<Scalar>(*A, Thyra::NOTRANS, *x, r.ptr(), -ST::one(), ST::one());
const ScalarMag r_nrm = Thyra::norm(*r), b_nrm = Thyra::norm(*b);
const ScalarMag rel_err = r_nrm/b_nrm, relaxTol = 10.0*tolerance;
result = rel_err <= relaxTol;
if(!result) success = false;
*out << "\nChecking the residual ourselves ...\n";
{
OSTab tab(out);
*out
<< "\n||b-A*x||/||b|| = "<<r_nrm<<"/"<<b_nrm<<" = "<<rel_err<<(result?" <= ":" > ")
<<"10.0*tolerance = "<<relaxTol<<": "<<(result?"passed":"failed")<<std::endl;
}
timer.stop();
*out << "\nTotal time = " << timer.totalElapsedTime() << " sec\n";
return success;
} // end runCgSolveExample()
bool tLSCHIntegrationTest::test_hScaling(int verbosity,std::ostream & os)
{
bool status = false;
bool allPassed = true;
RCP<const Epetra_Comm> comm = GetComm();
// build some operators
Teko::LinearOp F = Teko::Test::build2x2(*comm,1,2,2,1);
Teko::LinearOp G = Teko::Test::build2x2(*comm,1,-1,-3,1);
Teko::LinearOp D = Teko::Test::build2x2(*comm,1,-3,-1,1);
double diag[2];
diag[0] = 1.0/3.0; diag[1] = 1.0/2.0;
Teko::LinearOp M = Teko::Test::DiagMatrix(2,diag,"M");
diag[0] = 5.0; diag[1] = 9.0;
Teko::LinearOp H = Teko::Test::DiagMatrix(2,diag,"H");
Teko::LinearOp A = Thyra::block2x2<double>(F,G,D,Teuchos::null);
Teko::LinearOp exact;
{
// build some operators
Teko::LinearOp D0 = Teko::Test::build2x2(*comm,-1.0/3.0,2.0/3.0,2.0/3.0,-1.0/3.0);
Teko::LinearOp D1 = Teko::Test::build2x2(*comm,-1.5,-3.0,-3.0,-5.5);
Teko::LinearOp U = Teko::Test::build2x2(*comm,-0.5,-1.5,-0.5,-0.5);
exact = Thyra::block2x2<double>(D0,U,Teuchos::null,D1);
}
RCP<Teko::InverseLibrary> invLib = Teko::InverseLibrary::buildFromStratimikos();
RCP<Teko::InverseFactory> invFact = invLib->getInverseFactory("Amesos");
RCP<Teko::NS::InvLSCStrategy> strategy = rcp(new Teko::NS::InvLSCStrategy(invFact,M));
strategy->setHScaling(Teko::getDiagonal(H));
strategy->setUseFullLDU(false);
RCP<Teko::BlockPreconditionerFactory> precFact = rcp(new Teko::NS::LSCPreconditionerFactory(strategy));
RCP<Teko::BlockPreconditionerState> bps = Teuchos::rcp_dynamic_cast<Teko::BlockPreconditionerState>(precFact->buildPreconditionerState());
Teko::LinearOp prec = precFact->buildPreconditionerOperator(A,*bps);
Teko::BlockedLinearOp bA = Teko::toBlockedLinearOp(A);
std::stringstream ss;
ss << "invF = " << Teuchos::describe(*strategy->getInvF(bA,*bps),Teuchos::VERB_EXTREME) << std::endl;
ss << "invBQBt = " << Teuchos::describe(*strategy->getInvBQBt(bA,*bps),Teuchos::VERB_EXTREME) << std::endl;
ss << "invF = " << Teuchos::describe(*strategy->getInvBHBt(bA,*bps),Teuchos::VERB_EXTREME) << std::endl;
ss << "invMass = " << Teuchos::describe(*strategy->getInvMass(bA,*bps),Teuchos::VERB_EXTREME) << std::endl;
ss << "HScaling = " << Teuchos::describe(*strategy->getHScaling(bA,*bps),Teuchos::VERB_EXTREME) << std::endl;
ss << "prec = " << Teuchos::describe(*prec,Teuchos::VERB_EXTREME) << std::endl;
// construct a couple of vectors
const RCP<Epetra_Map> map = rcp(new Epetra_Map(2,0,*GetComm()));
Epetra_Vector ea(*map),eb(*map);
const RCP<const Thyra::MultiVectorBase<double> > x = BlockVector(ea,eb,prec->domain());
const RCP<Thyra::MultiVectorBase<double> > y = Thyra::createMembers(prec->range(),1);
ea[0] = 1.0; ea[1] = 0.0; eb[0] = 0.0; eb[1] = 0.0;
Thyra::apply(*prec,Thyra::NOTRANS,*x,y.ptr());
ss << "prec = " << Teuchos::describe(*y,Teuchos::VERB_EXTREME) << std::endl;
ea[0] = 0.0; ea[1] = 1.0; eb[0] = 0.0; eb[1] = 0.0;
Thyra::apply(*prec,Thyra::NOTRANS,*x,y.ptr());
ss << "prec = " << Teuchos::describe(*y,Teuchos::VERB_EXTREME) << std::endl;
ea[0] = 0.0; ea[1] = 0.0; eb[0] = 1.0; eb[1] = 0.0;
Thyra::apply(*prec,Thyra::NOTRANS,*x,y.ptr());
ss << "prec = " << Teuchos::describe(*y,Teuchos::VERB_EXTREME) << std::endl;
ea[0] = 0.0; ea[1] = 0.0; eb[0] = 0.0; eb[1] = 1.0;
Thyra::apply(*prec,Thyra::NOTRANS,*x,y.ptr());
ss << "prec = " << Teuchos::describe(*y,Teuchos::VERB_EXTREME) << std::endl;
Thyra::LinearOpTester<double> tester;
tester.show_all_tests(true);
Teuchos::FancyOStream fos(Teuchos::rcpFromRef(ss),"|||");
const bool result = tester.compare( *prec, *exact, Teuchos::ptrFromRef(fos) );
TEST_ASSERT(result,
std::endl << " tLSCHIntegration::test_hScaling "
<< ": Comparing preconditioner to exactly computed version");
const bool result2 = tester.compare( *H, *strategy->getHScaling(bA,*bps), Teuchos::ptrFromRef(fos) );
TEST_ASSERT(result2,
std::endl << " tLSCHIntegration::test_hScaling "
<< ": Comparing scaling of H operator");
const bool result3 = tester.compare( *build2x2(*comm,0.208333333333333,0.375, 0.375, 0.875),
*strategy->getInvBQBt(bA,*bps), Teuchos::ptrFromRef(fos) );
TEST_ASSERT(result3,
std::endl << " tLSCHIntegration::test_hScaling "
<< ": Comparing inv(BQBt) operator");
const bool result4 = tester.compare( *build2x2(*comm, 0.077777777777778, 0.177777777777778, 0.177777777777778, 0.477777777777778),
*strategy->getInvBHBt(bA,*bps), Teuchos::ptrFromRef(fos) );
TEST_ASSERT(result4,
std::endl << " tLSCHIntegration::test_hScaling "
<< ": Comparing inv(BHBt) operator");
if(not allPassed || verbosity>=10)
os << ss.str();
return allPassed;
}
// Testing Parameter Support
TEUCHOS_UNIT_TEST(model_evaluator_blocked_hessians, d2f_dp2)
{
typedef panzer::Traits::RealType RealType;
typedef Thyra::VectorBase<RealType> VectorType;
typedef Thyra::SpmdVectorBase<RealType> SpmdVectorType;
typedef Thyra::LinearOpBase<RealType> OperatorType;
using Teuchos::RCP;
using Teuchos::rcp_dynamic_cast;
typedef Thyra::ModelEvaluatorBase::InArgs<double> InArgs;
typedef Thyra::ModelEvaluatorBase::OutArgs<double> OutArgs;
typedef panzer::ModelEvaluator<double> PME;
bool distr_param_on = true;
AssemblyPieces ap;
buildAssemblyPieces(distr_param_on,ap);
int pIndex = -1;
std::vector<Teuchos::RCP<Teuchos::Array<std::string> > > p_names;
std::vector<Teuchos::RCP<Teuchos::Array<double> > > p_values;
bool build_transient_support = true;
RCP<PME> me
= Teuchos::rcp(new PME(ap.fmb,ap.rLibrary,ap.lof,p_names,p_values,Teuchos::null,ap.gd,build_transient_support,0.0));
const double DENSITY_VALUE = 3.7;
const double TEMPERATURE_VALUE = 2.0;
const double PERTURB_VALUE = 0.1;
// add distributed parameter
{
RCP<ThyraObjFactory<double> > th_param_lof = rcp_dynamic_cast<ThyraObjFactory<double> >(ap.param_lof);
RCP<VectorType> param_density = Thyra::createMember(th_param_lof->getThyraDomainSpace());
Thyra::assign(param_density.ptr(),DENSITY_VALUE);
pIndex = me->addDistributedParameter("DENSITY_P",th_param_lof->getThyraDomainSpace(),
ap.param_ged,param_density,ap.param_dofManager);
}
me->setupModel(ap.wkstContainer,ap.physicsBlocks,ap.bcs,
*ap.eqset_factory,
*ap.bc_factory,
ap.cm_factory,
ap.cm_factory,
ap.closure_models,
ap.user_data,false,"");
// panzer::printMeshTopology(out,*ap.dofManager);
RCP<OperatorType> D2fDp2 = me->create_DfDp_op(pIndex);
// test hessian
{
RCP<VectorType> x = Thyra::createMember(*me->get_x_space());
Thyra::assign(x.ptr(),TEMPERATURE_VALUE);
RCP<VectorType> dx = Thyra::createMember(*me->get_x_space());
Thyra::assign(dx.ptr(),PERTURB_VALUE);
InArgs in_args = me->createInArgs();
in_args.set_x(x);
in_args.set_alpha(1.0/0.1);
in_args.set_beta(1.0);
me->evalModel_D2fDp2(pIndex,in_args,dx,D2fDp2);
out << "D2fDp2 = \n" << Teuchos::describe(*D2fDp2,Teuchos::VERB_EXTREME) << std::endl;
}
RCP<OperatorType> W = me->create_DfDp_op(pIndex);
{
RCP<VectorType> x = Thyra::createMember(*me->get_x_space());
Thyra::assign(x.ptr(),TEMPERATURE_VALUE);
InArgs in_args = me->createInArgs();
in_args.set_x(x);
in_args.set_alpha(1.0);
in_args.set_beta(0.0);
OutArgs out_args = me->createOutArgs();
out_args.set_DfDp(pIndex,W);
me->evalModel(in_args,out_args);
out << "W = \n" << Teuchos::describe(*W,Teuchos::VERB_EXTREME) << std::endl;
}
Thyra::LinearOpTester<double> tester;
tester.show_all_tests(true);
tester.set_all_error_tol(1e-15);
tester.num_random_vectors(20);
double scaling_of_dfdp = PERTURB_VALUE/DENSITY_VALUE;
Teuchos::FancyOStream fout(Teuchos::rcpFromRef(std::cout));
const bool op_cmp = tester.compare( *Thyra::scaleAndAdjoint(scaling_of_dfdp,Thyra::NOTRANS,W.getConst()), *D2fDp2, Teuchos::ptrFromRef(fout));
TEST_ASSERT(op_cmp);
}
TEUCHOS_UNIT_TEST(tDiagonalPreconditionerFactory, blkdiag_inv_test)
{
using Teuchos::RCP;
// build global (or serial communicator)
#ifdef HAVE_MPI
Epetra_MpiComm Comm(MPI_COMM_WORLD);
#else
Epetra_SerialComm Comm;
#endif
int numProc = Comm.NumProc();
// preconditioners to test
std::string precName = "BlkDiag";
int myRows = 20;
int blockSize = 5;
Teko::LinearOp A = buildSystem(Comm,myRows);
// sanity check
TEUCHOS_ASSERT(myRows % blockSize==0);
{
RCP<Teuchos::ParameterList> pl = buildLibPL(1); // test diagonal construction
RCP<Teko::InverseLibrary> invLib = Teko::InverseLibrary::buildFromParameterList(*pl);
RCP<Teko::InverseFactory> invFact = invLib->getInverseFactory(precName);
Teko::LinearOp idA_fact = Teko::buildInverse(*invFact,A);
// test type
Teko::LinearOp srcOp = Teko::extractOperatorFromPrecOp(idA_fact);
TEST_ASSERT(Teuchos::rcp_dynamic_cast<const Thyra::EpetraLinearOp>(srcOp)!=Teuchos::null);
Teko::LinearOp idA_drct = Teko::getInvDiagonalOp(A,Teko::Diagonal);
Thyra::LinearOpTester<double> tester;
tester.show_all_tests(true);
const bool result = tester.compare( *idA_fact, *idA_drct, Teuchos::ptrFromRef(out));
if (!result) {
out << "Apply 0: FAILURE (\"" << precName << "\")" << std::endl;
success = false;
}
else
out << "Apply 0: SUCCESS (\"" << precName << "\")" << std::endl;
}
{
RCP<Teuchos::ParameterList> pl = buildLibPL(blockSize);
RCP<Teko::InverseLibrary> invLib = Teko::InverseLibrary::buildFromParameterList(*pl);
RCP<Teko::InverseFactory> invFact = invLib->getInverseFactory(precName);
Teko::LinearOp idA_fact = Teko::buildInverse(*invFact,A);
// test type
Teko::LinearOp srcOp = Teko::extractOperatorFromPrecOp(idA_fact);
TEST_ASSERT(Teuchos::rcp_dynamic_cast<const Thyra::EpetraLinearOp>(srcOp)!=Teuchos::null);
RCP<const Epetra_CrsMatrix> eop = Teuchos::rcp_dynamic_cast<const Epetra_CrsMatrix>(Thyra::get_Epetra_Operator(*srcOp));
TEST_EQUALITY(eop->NumGlobalNonzeros(),blockSize*blockSize*(numProc*myRows)/blockSize);
TEST_EQUALITY(eop->NumMyNonzeros(),blockSize*blockSize*myRows/blockSize);
}
}
bool run_composite_linear_ops_tests(
const Teuchos::RCP<const Teuchos::Comm<Thyra::Ordinal> > comm,
const int n,
const bool useSpmd,
const typename Teuchos::ScalarTraits<Scalar>::magnitudeType &tol,
const bool dumpAll,
Teuchos::FancyOStream *out_arg
)
{
using Teuchos::as;
typedef Teuchos::ScalarTraits<Scalar> ST;
typedef typename ST::magnitudeType ScalarMag;
typedef Teuchos::ScalarTraits<ScalarMag> STM;
using Teuchos::RCP;
using Teuchos::rcp;
using Teuchos::null;
using Teuchos::rcp_const_cast;
using Teuchos::rcp_dynamic_cast;
using Teuchos::dyn_cast;
using Teuchos::OSTab;
using Thyra::relErr;
using Thyra::passfail;
RCP<Teuchos::FancyOStream>
out = rcp(new Teuchos::FancyOStream(rcp(out_arg,false)));
const Teuchos::EVerbosityLevel
verbLevel = dumpAll?Teuchos::VERB_EXTREME:Teuchos::VERB_HIGH;
if (nonnull(out)) *out
<< "\n*** Entering run_composite_linear_ops_tests<"<<ST::name()<<">(...) ...\n";
bool success = true, result;
const ScalarMag warning_tol = ScalarMag(1e-2)*tol, error_tol = tol;
Thyra::LinearOpTester<Scalar> linearOpTester;
linearOpTester.linear_properties_warning_tol(warning_tol);
linearOpTester.linear_properties_error_tol(error_tol);
linearOpTester.adjoint_warning_tol(warning_tol);
linearOpTester.adjoint_error_tol(error_tol);
linearOpTester.dump_all(dumpAll);
Thyra::LinearOpTester<Scalar> symLinearOpTester(linearOpTester);
symLinearOpTester.check_for_symmetry(true);
symLinearOpTester.symmetry_warning_tol(STM::squareroot(warning_tol));
symLinearOpTester.symmetry_error_tol(STM::squareroot(error_tol));
RCP<const Thyra::VectorSpaceBase<Scalar> > space;
if(useSpmd) space = Thyra::defaultSpmdVectorSpace<Scalar>(comm,n,-1);
else space = Thyra::defaultSpmdVectorSpace<Scalar>(n);
if (nonnull(out)) *out
<< "\nUsing a basic vector space described as " << describe(*space,verbLevel) << " ...\n";
if (nonnull(out)) *out << "\nCreating random n x (n/2) multi-vector origA ...\n";
RCP<Thyra::MultiVectorBase<Scalar> >
mvOrigA = createMembers(space,n/2,"origA");
Thyra::seed_randomize<Scalar>(0);
//RTOpPack::show_spmd_apply_op_dump = true;
Thyra::randomize( as<Scalar>(as<Scalar>(-1)*ST::one()), as<Scalar>(as<Scalar>(+1)*ST::one()),
mvOrigA.ptr() );
RCP<const Thyra::LinearOpBase<Scalar> >
origA = mvOrigA;
if (nonnull(out)) *out << "\norigA =\n" << describe(*origA,verbLevel);
//RTOpPack::show_spmd_apply_op_dump = false;
if (nonnull(out)) *out << "\nTesting origA ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.check(*origA, out.ptr());
if(!result) success = false;
if (nonnull(out)) *out
<< "\nCreating implicit scaled linear operator A1 = scale(0.5,origA) ...\n";
RCP<const Thyra::LinearOpBase<Scalar> >
A1 = scale(as<Scalar>(0.5),origA);
if (nonnull(out)) *out << "\nA1 =\n" << describe(*A1,verbLevel);
if (nonnull(out)) *out << "\nTesting A1 ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.check(*A1,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\nTesting that A1.getOp() == origA ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.compare(
*dyn_cast<const Thyra::DefaultScaledAdjointLinearOp<Scalar> >(*A1).getOp(),
*origA,out.ptr());
if(!result) success = false;
{
if (nonnull(out)) *out
<< "\nUnwrapping origA to get non-persisting pointer to origA_1, scalar and transp ...\n";
Scalar scalar;
Thyra::EOpTransp transp;
const Thyra::LinearOpBase<Scalar> *origA_1 = NULL;
unwrap( *origA, &scalar, &transp, &origA_1 );
TEUCHOS_TEST_FOR_EXCEPT( origA_1 == NULL );
if (nonnull(out)) *out << "\nscalar = " << scalar << " == 1 ? ";
result = (scalar == ST::one());
if(!result) success = false;
if (nonnull(out)) *out << passfail(result) << std::endl;
if (nonnull(out)) *out << "\ntransp = " << toString(transp) << " == NOTRANS ? ";
result = (transp == Thyra::NOTRANS);
if(!result) success = false;
if (nonnull(out)) *out << passfail(result) << std::endl;
if (nonnull(out)) *out << "\nTesting that origA_1 == origA ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.compare(*origA_1,*origA,out.ptr());
if(!result) success = false;
}
{
if (nonnull(out)) *out << "\nUnwrapping A1 to get non-persisting pointer to origA_2 ...\n";
Scalar scalar;
Thyra::EOpTransp transp;
const Thyra::LinearOpBase<Scalar> *origA_2 = NULL;
unwrap( *A1, &scalar, &transp, &origA_2 );
TEUCHOS_TEST_FOR_EXCEPT( origA_2 == NULL );
if (nonnull(out)) *out << "\nscalar = " << scalar << " == 0.5 ? ";
result = (scalar == as<Scalar>(0.5));
if(!result) success = false;
if (nonnull(out)) *out << passfail(result) << std::endl;
if (nonnull(out)) *out << "\ntransp = " << toString(transp) << " == NOTRANS ? ";
result = (transp == Thyra::NOTRANS);
if(!result) success = false;
if (nonnull(out)) *out << passfail(result) << std::endl;
if (nonnull(out)) *out << "\nTesting that origA_2 == origA ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.compare(*origA_2,*origA,out.ptr());
if(!result) success = false;
}
if (nonnull(out)) *out << "\nCreating implicit scaled linear operator A2 = adjoint(A1) ...\n";
RCP<const Thyra::LinearOpBase<Scalar> >
A2 = adjoint(A1);
if (nonnull(out)) *out << "\nA2 =\n" << describe(*A2,verbLevel);
if (nonnull(out)) *out << "\nTesting A2 ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.check(*A2,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\nTesting that A2.getOp() == A1 ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.compare(*dyn_cast<const Thyra::DefaultScaledAdjointLinearOp<Scalar> >(*A2).getOp(),*A1,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\nCreating implicit scaled, adjoined linear operator A3 = adjoint(scale(2.0,(A2)) ...\n";
RCP<const Thyra::LinearOpBase<Scalar> >
A3 = adjoint(scale(as<Scalar>(2.0),A2));
if (nonnull(out)) *out << "\nA3 =\n" << describe(*A3,verbLevel);
if (nonnull(out)) *out << "\nTesting A3 ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.check(*A3,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\nTesting that A3 == origA ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.compare(*A3,*origA,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\nCalling all of the rest of the functions for non-const just to test them ...\n";
RCP<Thyra::LinearOpBase<Scalar> >
A4 = nonconstScale(
as<Scalar>(0.25)
,nonconstAdjoint(
nonconstTranspose(
nonconstAdjoint(
nonconstScaleAndAdjoint(
as<Scalar>(4.0)
,Thyra::TRANS
,Teuchos::rcp_const_cast<Thyra::LinearOpBase<Scalar> >(origA)
)
)
)
)
);
if(!ST::isComplex) A4 = nonconstTranspose(nonconstAdjoint(A4)); // Should result in CONJ
if (nonnull(out)) *out << "\nA4 =\n" << describe(*A4,verbLevel);
if (nonnull(out)) *out << "\nTesting A4 ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.check(*A4,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\nCalling all of the rest of the functions for const just to test them ...\n";
RCP<const Thyra::LinearOpBase<Scalar> >
A5 = scale(
as<Scalar>(0.25)
,adjoint(
transpose(
adjoint(
scaleAndAdjoint(
as<Scalar>(4.0)
,Thyra::TRANS
,origA
)
)
)
)
);
if(!ST::isComplex) A5 = transpose(adjoint(A5)); // Should result in CONJ
if (nonnull(out)) *out << "\nA5 =\n" << describe(*A5,verbLevel);
if (nonnull(out)) *out << "\nTesting A5 ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.check(*A5,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\nCreating a multiplied operator A6 = origA^H*A1 ...\n";
RCP<const Thyra::LinearOpBase<Scalar> >
A6 = multiply(adjoint(origA),A1);
if (nonnull(out)) *out << "\nA6 =\n" << describe(*A6,verbLevel);
if (nonnull(out)) *out << "\nTesting A6 ...\n";
Thyra::seed_randomize<Scalar>(0);
result = symLinearOpTester.check(*A6,out.ptr());
if(!result) success = false;
// Note that testing the symmetry above helps to check the transpose mode
// against the non-transpose mode!
#ifdef TEUCHOS_DEBUG
if (nonnull(out)) *out << "\nCreating an invalid multiplied operator A6b = origA*origA (should throw an exception) ...\n\n";
try {
RCP<const Thyra::LinearOpBase<Scalar> >
A6b = multiply(origA,origA);
result = true;
}
TEUCHOS_STANDARD_CATCH_STATEMENTS(true,out.get()?*out:std::cerr,result)
if (nonnull(out))
*out << "\nCaught expected exception : " << (result?"failed\n":"passed\n");
if(result) success = false;
#endif // TEUCHOS_DEBUG
if (nonnull(out)) *out << "\nCreating a non-const multiplied operator A7 = origA^H*A1 ...\n";
RCP<Thyra::LinearOpBase<Scalar> >
A7 = nonconstMultiply(
rcp_const_cast<Thyra::LinearOpBase<Scalar> >(adjoint(origA))
,rcp_const_cast<Thyra::LinearOpBase<Scalar> >(A1)
);
if (nonnull(out)) *out << "\nA7 =\n" << describe(*A7,verbLevel);
if (nonnull(out)) *out << "\nTesting A7 ...\n";
Thyra::seed_randomize<Scalar>(0);
result = symLinearOpTester.check(*A7,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\nCreating an added operator A8 = origA + A1 ...\n";
RCP<const Thyra::LinearOpBase<Scalar> >
A8 = add(origA,A1);
if (nonnull(out)) *out << "\nA8 =\n" << describe(*A8,verbLevel);
if (nonnull(out)) *out << "\nTesting A8 ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.check(*A8,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\nCreating a symmetric subtracted operator A8b = A6 + adjoint(origA)*origA ...\n";
RCP<const Thyra::LinearOpBase<Scalar> >
A8b = subtract(A6,multiply(adjoint(origA),origA));
if (nonnull(out)) *out << "\nA8b =\n" << describe(*A8b,verbLevel);
if (nonnull(out)) *out << "\nTesting A8b ...\n";
Thyra::seed_randomize<Scalar>(0);
result = symLinearOpTester.check(*A8b,out.ptr());
if(!result) success = false;
#ifdef TEUCHOS_DEBUG
if (nonnull(out)) *out << "\nCreating an invalid added operator A8c = origA + adjoint(origA) (should throw an exception) ...\n\n";
try {
RCP<const Thyra::LinearOpBase<Scalar> >
A8c = add(origA,adjoint(origA));
result = true;
}
TEUCHOS_STANDARD_CATCH_STATEMENTS(true,out.get()?*out:std::cerr,result)
if (nonnull(out))
*out << "\nCaught expected exception : " << (result?"failed\n":"passed\n");
if(result) success = false;
#endif // TEUCHOS_DEBUG
RCP<const Thyra::LinearOpBase<Scalar> >
nullOp = null;
if (nonnull(out)) *out << "\nCreating a blocked 2x2 linear operator A9 = [ A6, A1^H; A1, null ] ...\n";
RCP<const Thyra::LinearOpBase<Scalar> >
A9 = Thyra::block2x2<Scalar>(
A6, adjoint(A1)
,A1, nullOp
);
if (nonnull(out)) *out << "\nA9 =\n" << describe(*A9,verbLevel);
if (nonnull(out)) *out << "\nTesting A9 ...\n";
Thyra::seed_randomize<Scalar>(0);
result = symLinearOpTester.check(*A9,out.ptr());
if(!result) success = false;
// Note that testing the symmetry above helps to check the transpose mode
// against the non-transpose mode!
if (nonnull(out)) *out << "\nCreating a blocked 2x2 linear operator A9_a = [ A6, A1^H; A1, null ] using pre-formed range and domain product spaces ...\n";
RCP<Thyra::PhysicallyBlockedLinearOpBase<Scalar> >
A9_a = rcp(new Thyra::DefaultBlockedLinearOp<Scalar>());
A9_a->beginBlockFill(
rcp_dynamic_cast<const Thyra::BlockedLinearOpBase<Scalar> >(A9,true)->productRange()
,rcp_dynamic_cast<const Thyra::BlockedLinearOpBase<Scalar> >(A9,true)->productDomain()
);
A9_a->setBlock(0,0,A6);
A9_a->setBlock(0,1,adjoint(A1));
A9_a->setBlock(1,0,A1);
A9_a->endBlockFill();
if (nonnull(out)) *out << "\nA9_a =\n" << describe(*A9_a,verbLevel);
if (nonnull(out)) *out << "\nTesting A9_a ...\n";
Thyra::seed_randomize<Scalar>(0);
result = symLinearOpTester.check(*A9_a,out.ptr());
if(!result) success = false;
// Note that testing the symmetry above helps to check the transpose mode
// against the non-transpose mode!
if (nonnull(out)) *out << "\nComparing A9 == A9_a ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.compare(*A9,*A9_a,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\nCreating a blocked 2x2 linear operator A9_b = [ A6, A1^H; A1, null ] using flexible fill ...\n";
RCP<Thyra::PhysicallyBlockedLinearOpBase<Scalar> >
A9_b = rcp(new Thyra::DefaultBlockedLinearOp<Scalar>());
A9_b->beginBlockFill();
A9_b->setBlock(0,0,A6);
A9_b->setBlock(0,1,adjoint(A1));
A9_b->setBlock(1,0,A1);
A9_b->endBlockFill();
if (nonnull(out)) *out << "\nA9_b =\n" << describe(*A9_b,verbLevel);
if (nonnull(out)) *out << "\nTesting A9_b ...\n";
Thyra::seed_randomize<Scalar>(0);
result = symLinearOpTester.check(*A9_b,out.ptr());
if(!result) success = false;
// Note that testing the symmetry above helps to check the transpose mode
// against the non-transpose mode!
if (nonnull(out)) *out << "\nComparing A9 == A9_b ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.compare(*A9,*A9_b,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\nCreating a blocked 2x2 linear operator A9a = [ null, A1^H; A1, null ] ...\n";
RCP<const Thyra::LinearOpBase<Scalar> >
A9a = Thyra::block2x2<Scalar>(
nullOp, adjoint(A1),
A1, nullOp
);
if (nonnull(out)) *out << "\nA9a =\n" << describe(*A9a,verbLevel);
if (nonnull(out)) *out << "\nTesting A9a ...\n";
Thyra::seed_randomize<Scalar>(0);
result = symLinearOpTester.check(*A9a,out.ptr());
if(!result) success = false;
// Note that testing the symmetry above helps to check the transpose mode
// against the non-transpose mode!
#ifdef TEUCHOS_DEBUG
if (nonnull(out)) *out << "\nCreating an invalid blocked 2x2 operator A9b = [ A6, A1^H; A1, A1 ] (should throw an exception) ...\n\n";
try {
RCP<const Thyra::LinearOpBase<Scalar> >
A9b = Thyra::block2x2<Scalar>(
A6, adjoint(A1),
A1, A1
);
result = true;
}
TEUCHOS_STANDARD_CATCH_STATEMENTS(true,out.get()?*out:std::cerr,result)
if (nonnull(out))
*out << "\nCaught expected exception : " << (result?"failed\n":"passed\n");
if(result) success = false;
#endif // TEUCHOS_DEBUG
#ifdef TEUCHOS_DEBUG
if (nonnull(out)) *out << "\nCreating an invalid blocked 2x2 operator A9c = [ A1, A1 ; null, null ] (should throw an exception) ...\n\n";
try {
RCP<const Thyra::LinearOpBase<Scalar> >
A9c = Thyra::block2x2<Scalar>(
A1, A1,
nullOp, nullOp
);
result = true;
}
TEUCHOS_STANDARD_CATCH_STATEMENTS(true,out.get()?*out:std::cerr,result)
if (nonnull(out))
*out << "\nCaught expected exception : " << (result?"failed\n":"passed\n");
if(result) success = false;
#endif // TEUCHOS_DEBUG
#ifdef TEUCHOS_DEBUG
if (nonnull(out)) *out << "\nCreating an invalid blocked 2x2 operator A9d = [ A1, null; A1, null ] (should throw an exception) ...\n\n";
try {
RCP<const Thyra::LinearOpBase<Scalar> >
A9d = Thyra::block2x2<Scalar>(
A1, nullOp,
A1, nullOp
);
result = true;
}
TEUCHOS_STANDARD_CATCH_STATEMENTS(true,out.get()?*out:std::cerr,result)
if (nonnull(out))
*out << "\nCaught expected exception : " << (result?"failed\n":"passed\n");
if(result) success = false;
#endif // TEUCHOS_DEBUG
if (nonnull(out)) *out << "\nCreating a blocked 2x1 linear operator A10 = [ A6; A1 ] ...\n";
RCP<const Thyra::LinearOpBase<Scalar> >
A10 = Thyra::block2x1<Scalar>(
A6,
A1
);
if (nonnull(out)) *out << "\nA10 =\n" << describe(*A10,verbLevel);
if (nonnull(out)) *out << "\nTesting A10 ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.check(*A10,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\nCreating a blocked 1x2 linear operator A11 = [ A9, A10 ] ...\n";
RCP<const Thyra::LinearOpBase<Scalar> >
A11 = Thyra::block1x2<Scalar>( A9, A10 );
if (nonnull(out)) *out << "\nA11 =\n" << describe(*A11,verbLevel);
if (nonnull(out)) *out << "\nTesting A11 ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.check(*A11,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\nCreating a zero linear operator A12 = 0 (range and domain spaces of origA) ...\n";
RCP<const Thyra::LinearOpBase<Scalar> >
A12 = Thyra::zero(origA->range(),origA->domain());
if (nonnull(out)) *out << "\nA12 =\n" << describe(*A12,verbLevel);
if (nonnull(out)) *out << "\nTesting A12 ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.check(*A12,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\nCreating a blocked 2x2 linear operator A13 = [ zero, A1^H; A1, zero ] ...\n";
RCP<const Thyra::LinearOpBase<Scalar> >
A13 = Thyra::block2x2<Scalar>(
Thyra::zero(A1->domain(),A1->domain()), adjoint(A1),
A1, Thyra::zero(A1->range(),A1->range())
);
if (nonnull(out)) *out << "\nA13 =\n" << describe(*A13,verbLevel);
if (nonnull(out)) *out << "\nComparing A9a == A13 ...\n";
Thyra::seed_randomize<Scalar>(0);
result = linearOpTester.compare(*A9a,*A13,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\nCreating a zero linear operator A14 = I (range space of origA) ...\n";
RCP<const Thyra::LinearOpBase<Scalar> >
A14 = Thyra::identity(origA->range());
if (nonnull(out)) *out << "\nA14 =\n" << describe(*A14,verbLevel);
if (nonnull(out)) *out << "\nTesting A14 ...\n";
Thyra::seed_randomize<Scalar>(0);
result = symLinearOpTester.check(*A14,out.ptr());
if(!result) success = false;
if (nonnull(out)) *out << "\n*** Leaving run_composite_linear_ops_tests<"<<ST::name()<<">(...) ...\n";
return success;
} // end run_composite_linear_ops_tests() [Doxygen looks for this!]
int main(int argc, char* argv[])
{
using Teuchos::describe;
using Teuchos::rcp;
using Teuchos::rcp_dynamic_cast;
using Teuchos::rcp_const_cast;
using Teuchos::RCP;
using Teuchos::CommandLineProcessor;
using Teuchos::ParameterList;
using Teuchos::sublist;
using Teuchos::getParametersFromXmlFile;
typedef ParameterList::PrintOptions PLPrintOptions;
using Thyra::inverse;
using Thyra::initializePreconditionedOp;
using Thyra::initializeOp;
using Thyra::unspecifiedPrec;
using Thyra::solve;
typedef RCP<const Thyra::LinearOpBase<double> > LinearOpPtr;
typedef RCP<Thyra::VectorBase<double> > VectorPtr;
bool success = true;
bool verbose = true;
Teuchos::GlobalMPISession mpiSession(&argc,&argv);
Teuchos::RCP<Teuchos::FancyOStream>
out = Teuchos::VerboseObjectBase::getDefaultOStream();
try {
//
// Read in options from the command line
//
CommandLineProcessor clp(false); // Don't throw exceptions
const int numVerbLevels = 6;
Teuchos::EVerbosityLevel
verbLevelValues[] =
{
Teuchos::VERB_DEFAULT, Teuchos::VERB_NONE,
Teuchos::VERB_LOW, Teuchos::VERB_MEDIUM,
Teuchos::VERB_HIGH, Teuchos::VERB_EXTREME
};
const char*
verbLevelNames[] =
{ "default", "none", "low", "medium", "high", "extreme" };
Teuchos::EVerbosityLevel verbLevel = Teuchos::VERB_MEDIUM;
clp.setOption( "verb-level", &verbLevel,
numVerbLevels, verbLevelValues, verbLevelNames,
"Verbosity level used for all objects."
);
std::string matrixFile = ".";
clp.setOption( "matrix-file", &matrixFile,
"Matrix file."
);
std::string paramListFile = "";
clp.setOption( "param-list-file", ¶mListFile,
"Parameter list for preconditioner and solver blocks."
);
bool showParams = false;
clp.setOption( "show-params", "no-show-params", &showParams,
"Show the parameter list or not."
);
bool testPrecIsLinearOp = true;
clp.setOption( "test-prec-is-linear-op", "test-prec-is-linear-op", &testPrecIsLinearOp,
"Test if the preconditioner is a linear operator or not."
);
double solveTol = 1e-8;
clp.setOption( "solve-tol", &solveTol,
"Tolerance for the solution to determine success or failure!"
);
clp.setDocString(
"This example program shows how to use one linear solver (e.g. AztecOO)\n"
"as a preconditioner for another iterative solver (e.g. Belos).\n"
);
// Note: Use --help on the command line to see the above documentation
CommandLineProcessor::EParseCommandLineReturn parse_return = clp.parse(argc,argv);
if( parse_return != CommandLineProcessor::PARSE_SUCCESSFUL ) return parse_return;
//
*out << "\nA) Reading in the matrix ...\n";
//
#ifdef HAVE_MPI
Epetra_MpiComm comm(MPI_COMM_WORLD);
#else
Epetra_SerialComm comm;
#endif
const LinearOpPtr A = readEpetraCrsMatrixFromMatrixMarketAsLinearOp(
matrixFile, comm, "A");
*out << "\nA = " << describe(*A,verbLevel) << "\n";
const RCP<ParameterList> paramList = getParametersFromXmlFile(paramListFile);
if (showParams) {
*out << "\nRead in parameter list:\n\n";
paramList->print(*out, PLPrintOptions().indent(2).showTypes(true));
}
//
*out << "\nB) Get the preconditioner as a forward solver\n";
//
const RCP<ParameterList> precParamList = sublist(paramList, "Preconditioner Solver");
Stratimikos::DefaultLinearSolverBuilder precSolverBuilder;
precSolverBuilder.setParameterList(precParamList);
const RCP<const Thyra::LinearOpWithSolveFactoryBase<double> > precSolverStrategy
= createLinearSolveStrategy(precSolverBuilder);
//precSolverStrategy->setVerbLevel(verbLevel);
const LinearOpPtr A_inv_prec = inverse<double>(*precSolverStrategy, A,
Thyra::SUPPORT_SOLVE_FORWARD_ONLY,
Teuchos::null, // Use internal solve criteria
Thyra::IGNORE_SOLVE_FAILURE // Ignore solve failures since this is just a prec
);
*out << "\nA_inv_prec = " << describe(*A_inv_prec, verbLevel) << "\n";
if (testPrecIsLinearOp) {
*out << "\nTest that the preconditioner A_inv_prec is indeed a linear operator.\n";
Thyra::LinearOpTester<double> linearOpTester;
linearOpTester.check_adjoint(false);
const bool linearOpCheck = linearOpTester.check(*A_inv_prec, out.ptr());
if (!linearOpCheck) {
success = false;
}
}
//
*out << "\nC) Create the forward solver using the created preconditioner ...\n";
//
const RCP<ParameterList> fwdSolverParamList = sublist(paramList, "Forward Solver");
Stratimikos::DefaultLinearSolverBuilder fwdSolverSolverBuilder;
fwdSolverSolverBuilder.setParameterList(fwdSolverParamList);
const RCP<const Thyra::LinearOpWithSolveFactoryBase<double> > fwdSolverSolverStrategy
= createLinearSolveStrategy(fwdSolverSolverBuilder);
const RCP<Thyra::LinearOpWithSolveBase<double> >
A_lows = fwdSolverSolverStrategy->createOp();
initializePreconditionedOp<double>( *fwdSolverSolverStrategy, A,
unspecifiedPrec(A_inv_prec), A_lows.ptr());
//A_lows->setVerbLevel(verbLevel);
*out << "\nA_lows = " << describe(*A_lows, verbLevel) << "\n";
//
*out << "\nD) Solve the linear system for a random RHS ...\n";
//
VectorPtr x = createMember(A->domain());
VectorPtr b = createMember(A->range());
Thyra::randomize(-1.0, +1.0, b.ptr());
Thyra::assign(x.ptr(), 0.0); // Must give an initial guess!
Thyra::SolveStatus<double>
solveStatus = solve<double>( *A_lows, Thyra::NOTRANS, *b, x.ptr() );
*out << "\nSolve status:\n" << solveStatus;
*out << "\nSolution ||x|| = " << Thyra::norm(*x) << "\n";
if(showParams) {
*out << "\nParameter list after use:\n\n";
paramList->print(*out, PLPrintOptions().indent(2).showTypes(true));
}
//
*out << "\nF) Checking the error in the solution of r=b-A*x ...\n";
//
VectorPtr Ax = Thyra::createMember(b->space());
Thyra::apply( *A, Thyra::NOTRANS, *x, Ax.ptr() );
VectorPtr r = Thyra::createMember(b->space());
Thyra::V_VmV<double>(r.ptr(), *b, *Ax);
double
Ax_nrm = Thyra::norm(*Ax),
r_nrm = Thyra::norm(*r),
b_nrm = Thyra::norm(*b),
r_nrm_over_b_nrm = r_nrm / b_nrm;
bool resid_tol_check = ( r_nrm_over_b_nrm <= solveTol );
if(!resid_tol_check) success = false;
*out
<< "\n||A*x|| = " << Ax_nrm << "\n";
*out
<< "\n||A*x-b||/||b|| = " << r_nrm << "/" << b_nrm
<< " = " << r_nrm_over_b_nrm << " <= " << solveTol
<< " : " << Thyra::passfail(resid_tol_check) << "\n";
Teuchos::TimeMonitor::summarize(*out<<"\n");
}
TEUCHOS_STANDARD_CATCH_STATEMENTS(verbose, std::cerr, success)
if (verbose) {
if(success) *out << "\nCongratulations! All of the tests checked out!\n";
else *out << "\nOh no! At least one of the tests failed!\n";
}
return ( success ? EXIT_SUCCESS : EXIT_FAILURE );
}
TEUCHOS_UNIT_TEST(tProbingFactory, parameterlist_constr)
{
// build global (or serial communicator)
#ifdef HAVE_MPI
Epetra_MpiComm Comm(MPI_COMM_WORLD);
#else
Epetra_SerialComm Comm;
#endif
Teko::LinearOp lo = buildSystem(Comm,10);
Teuchos::RCP<Teko::InverseLibrary> invLib = Teko::InverseLibrary::buildFromStratimikos();
Teuchos::RCP<Teko::InverseFactory> directSolveFactory = invLib->getInverseFactory("Amesos");
{
Teuchos::ParameterList pl;
pl.set("Inverse Type","Amesos");
pl.set("Probing Graph Operator",lo);
Teuchos::RCP<Teko::ProbingPreconditionerFactory> probeFact
= rcp(new Teko::ProbingPreconditionerFactory);
probeFact->initializeFromParameterList(pl);
RCP<Teko::InverseFactory> invFact = Teuchos::rcp(new Teko::PreconditionerInverseFactory(probeFact,Teuchos::null));
Teko::LinearOp probedInverse = Teko::buildInverse(*invFact,lo);
Teko::LinearOp invLo = Teko::buildInverse(*directSolveFactory,lo);
Thyra::LinearOpTester<double> tester;
tester.dump_all(true);
tester.show_all_tests(true);
{
const bool result = tester.compare( *probedInverse, *invLo, &out);
if (!result) {
out << "Apply: FAILURE" << std::endl;
success = false;
}
else
out << "Apply: SUCCESS" << std::endl;
}
}
{
Teuchos::RCP<const Epetra_CrsGraph> theGraph
= rcpFromRef(rcp_dynamic_cast<const Epetra_CrsMatrix>(Thyra::get_Epetra_Operator(*lo))->Graph());
Teuchos::ParameterList pl;
pl.set("Inverse Type","Amesos");
pl.set("Probing Graph",theGraph);
Teuchos::RCP<Teko::ProbingPreconditionerFactory> probeFact
= rcp(new Teko::ProbingPreconditionerFactory);
probeFact->initializeFromParameterList(pl);
RCP<Teko::InverseFactory> invFact = Teuchos::rcp(new Teko::PreconditionerInverseFactory(probeFact,Teuchos::null));
Teko::LinearOp probedInverse = Teko::buildInverse(*invFact,lo);
Teko::LinearOp invLo = Teko::buildInverse(*directSolveFactory,lo);
Thyra::LinearOpTester<double> tester;
tester.dump_all(true);
tester.show_all_tests(true);
{
const bool result = tester.compare( *probedInverse, *invLo, &out);
if (!result) {
out << "Apply: FAILURE" << std::endl;
success = false;
}
else
out << "Apply: SUCCESS" << std::endl;
}
}
}
TEUCHOS_UNIT_TEST(tStratimikosFactory, test_BlockGaussSeidel)
{
using Teuchos::RCP;
using Teuchos::ParameterList;
// build global (or serial communicator)
#ifdef HAVE_MPI
Epetra_MpiComm comm(MPI_COMM_WORLD);
#else
Epetra_SerialComm comm;
#endif
// build epetra operator
RCP<Epetra_Operator> eA = buildStridedSystem(comm,5);
RCP<Thyra::LinearOpBase<double> > tA = Thyra::nonconstEpetraLinearOp(eA);
// build stratimikos factory, adding Teko's version
Stratimikos::DefaultLinearSolverBuilder stratFactory;
stratFactory.setPreconditioningStrategyFactory(
Teuchos::abstractFactoryStd<Thyra::PreconditionerFactoryBase<double>,Teko::StratimikosFactory>(),
"Teko");
RCP<ParameterList> params = Teuchos::rcp(new ParameterList(*stratFactory.getValidParameters()));
ParameterList & tekoList = params->sublist("Preconditioner Types").sublist("Teko");
tekoList.set("Write Block Operator", false);
tekoList.set("Test Block Operator", false);
tekoList.set("Strided Blocking","1 1");
tekoList.set("Inverse Type","BGS");
ParameterList & ifl = tekoList.sublist("Inverse Factory Library");
ifl.sublist("BGS").set("Type","Block Gauss-Seidel");
ifl.sublist("BGS").set("Inverse Type","Amesos");
// RCP<Thyra::PreconditionerFactoryBase<double> > precFactory
// = stratFactory.createPreconditioningStrategy("Teko");
// build operator to test against
Teko::LinearOp testOp;
{
Teuchos::ParameterList iflCopy(ifl);
RCP<Epetra_Operator> strided_eA = Teuchos::rcp(new Teko::Epetra::StridedEpetraOperator(2,eA));
RCP<Teko::InverseLibrary> invLib = Teko::InverseLibrary::buildFromParameterList(iflCopy);
RCP<const Teko::InverseFactory> invFact = invLib->getInverseFactory("BGS");
RCP<Teko::Epetra::InverseFactoryOperator> invFactOp = Teuchos::rcp(new Teko::Epetra::InverseFactoryOperator(invFact));
invFactOp->buildInverseOperator(strided_eA);
testOp = Thyra::epetraLinearOp(invFactOp,Thyra::NOTRANS,Thyra::EPETRA_OP_APPLY_APPLY_INVERSE);
}
stratFactory.setParameterList(params);
RCP<Thyra::PreconditionerFactoryBase<double> > precFactory
= stratFactory.createPreconditioningStrategy("Teko");
// build teko preconditioner factory
RCP<Thyra::PreconditionerBase<double> > prec = Thyra::prec<double>(*precFactory,tA);
Teko::LinearOp precOp = prec->getUnspecifiedPrecOp();
TEST_ASSERT(precOp!=Teuchos::null);
Thyra::LinearOpTester<double> tester;
tester.show_all_tests(true);
tester.set_all_error_tol(0);
TEST_ASSERT(tester.compare(*precOp,*testOp,Teuchos::ptrFromRef(out)));
}
TEUCHOS_UNIT_TEST(tIterativePreconditionerFactory, parameter_list_init)
{
// build global (or serial communicator)
#ifdef HAVE_MPI
Epetra_MpiComm Comm(MPI_COMM_WORLD);
#else
Epetra_SerialComm Comm;
#endif
Teko::LinearOp A = build2x2(Comm,1,2,3,4);
Thyra::LinearOpTester<double> tester;
tester.show_all_tests(true);
{
RCP<Teuchos::ParameterList> pl = buildLibPL(4,"Amesos");
RCP<Teko::IterativePreconditionerFactory> precFact = rcp(new Teko::IterativePreconditionerFactory());
RCP<Teko::InverseFactory> invFact = rcp(new Teko::PreconditionerInverseFactory(precFact,Teuchos::null));
try {
precFact->initializeFromParameterList(*pl);
out << "Passed correct parameter list" << std::endl;
Teko::LinearOp prec = Teko::buildInverse(*invFact,A);
}
catch(...) {
success = false;
out << "Failed correct parameter list" << std::endl;
}
}
{
Teuchos::ParameterList pl;
pl.set("Preconditioner Type","Amesos");
RCP<Teko::IterativePreconditionerFactory> precFact = rcp(new Teko::IterativePreconditionerFactory());
RCP<Teko::InverseFactory> invFact = rcp(new Teko::PreconditionerInverseFactory(precFact,Teuchos::null));
try {
precFact->initializeFromParameterList(pl);
out << "Passed iteration count" << std::endl;
Teko::LinearOp prec = Teko::buildInverse(*invFact,A);
}
catch(...) {
out << "Failed iteration count" << std::endl;
}
}
{
Teuchos::ParameterList pl;
pl.set("Iteration Count",4);
pl.set("Precondiioner Type","Amesos");
RCP<Teko::IterativePreconditionerFactory> precFact = rcp(new Teko::IterativePreconditionerFactory());
try {
precFact->initializeFromParameterList(pl);
success = false;
out << "Failed preconditioner type" << std::endl;
// these should not be executed
RCP<Teko::InverseFactory> invFact = rcp(new Teko::PreconditionerInverseFactory(precFact,Teuchos::null));
Teko::LinearOp prec = Teko::buildInverse(*invFact,A);
}
catch(const std::exception & exp) {
out << "Passed preconditioner type" << std::endl;
}
}
}