#Neuron Segmentation Project

##Packages to install

• ###tiff library (not required currently) :

zip of the tiff library source files are present inside third_party directory. Follow the README inside for details.

• ###opencv:

Clone the opencv repo at https://github.com/Itseez/opencv. Follow the instructions for installation on Linux at http://opencv.org/. Add to ~/.bashrc export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:/usr/local/lib. To test sample opencv code, compile using g++ <file_name> pkg-config opencv --cflags --libs

##Build and run neuron segmentation package

Inside the project root directory, type make to build the project. A binary called segment will be created.

Command to run the software: ./segment <image directory with / at end>