Server application for the eXintegrator Affymetrix gene expression data analysis system
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lmjakt/exint_server
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BIG TROUBLE. PROBABLY NEED TO MANUALLY REMOVE AND INSTALL POSTGRESQL SO THAT I CAN MAKE USE OF LIBPQ++ OR REMOVE THE DEPENDANCY ONCE AND FOR ALL. This application is useless without having the appropriate databases set up. For more information about this, and various databases communicate directly with me, or have a look around in some appropriate places (see end of this). To install: Check the documentation found at: http://www.cdb.riken.jp/scb/documentation.html Since that might not be up to date, or since it might have disappeared, here is a short description of the process and requirements. 1. Make sure to have the Qt (version 3) development libraries installed. 2. Make sure to have Postgresql installed along with the old C++ interface called libpq++. 3. Have some idea as to where the above two are located. 4. Make a Makefile using the qmake command.. > qmake -o Makefile mtserver.pro 5. Edit the Makefile to make it useful. You'll need to : a. Add -DHAVE_NAMESPACE_STD -DHAVE_CXX_STRING_HEADER -DDLLIMPORT="" to the end of the CXXFLAGS = line. (This is something to do with the libpq++ libraries, and is something I don't really understand). b. Add -I/usrlocal/pgsql/include to the end of the INCPATH = line. Or change the above to where the include files have been installed. If postgresql has been installed using an rpm or other package management system, then the above path will be different. You may still need to add something like that, since you'll almost certainly have to install the libpq++ libraries yourself somewhere. c. Add -L/usr/local/pgsql/lib -lpq++ to the LIBS = line, in an appropriate manner. (See the Makefile_with_pq_solving_thing for an example how to do this, or look at the old Makefile distributed with this source code before you run qmake.) 6. Run 'make', or possibly 'make clean' followed by 'make'. 7. Find some documentation as to what to do with the mtserver application. ************************************************************************* Useful information. Currently there is some not completely up to date documentation at: http://www.cdb.riken.jp/scb/documentation/index.html but I rather suspect that will change with time. Hence to find out something more about the system, google for 'eXintegrator' or to contact me, google for 'Martin Jakt'. Presently I can be contacted on mjakt@cdb.riken.jp. if you got this far.. good luck.. Martin Jakt Stem Cell Biology Group Riken Center for Developmental Biology Kobe 31-10-08
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