forked from ivohof/treekin
Numerically integrate a Markov process -- especially for predicting RNA folding kinetics
License
marcelTBI/treekin
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Folders and files
Name | Name | Last commit message | Last commit date | |
---|---|---|---|---|
Repository files navigation
ATTENTION: use --rrecover and --wrecover options with catution: first: run treekin with -w, i.e. let it diagonalize the input matrix once and write the eigenvalues and eigenvectors to the corresponding *.{evals,evecs}.bin files second: run treekin with the -r option, i.e let it read those *.{evals,evecs}.bin files and do ONLY the iteration (no diagonalization) NOTE: when using --rrecover and --wrecover option in combination with the -a option, treekin assumes that the absorbing state between consecutive calls of the program are the _same_ (since the information about the absorbing state influences the transition matrix). If you change the -a option while calling treekin with --rrecover, treekin will produce junk output (since the transition matrix that has been diagonalized earlier is different from the current one, due to the different absorbing state)
About
Numerically integrate a Markov process -- especially for predicting RNA folding kinetics
Resources
License
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published
Languages
- C 86.1%
- C++ 8.9%
- Roff 4.4%
- Shell 0.6%