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RELEASE NOTES

Build8.0b20150522.76

* A new class influxspecies has been introduced to deal with membrane finite diffusion of external molecules (look at the documentation for details)
* A new parameter systemArchitecture in acsm2m.conf has been added to select the system architecture in a easiest way
* Now surface is computed too
* Runtime interface has been enxhanced, information have been riorganized and surface has been added
* Files can be now saved only at the beginning and at the end of the simulation using "-1" value for the specific parameters timeStructuresSavingInterval, fileTimesSaveInterval and fileAmountSaveInterval
* Various little improvements
* Documentation has been updated. 
* Demo folders CSTR, protocell_buffered_flow and protocell_finite_membrane_passage have been added to test the simulation for the specific environmental system architecture

Build7.1b20140721.75

* Volume now growths as a function of the lipids. Relation between volume and lipids is computed during the initialization and it is equal to 
V = omega*C^{3/2}.  

Build7.0b20140623.74

* Volume growth has been introduced with adiabatic assumption
* Protocell division has been added 

Build6.1b20140529.73

* A bug in the gillespie introduction has been fixed

Build6.1b20140529.72

* A bug in the reaction parameter saving procedure has been fixed
* New the user can choose if save reaction parameters
* Simulation prompt results every XXX seconds
* At each generation now concentration can be randomly reassigned or first concentration are assigned
* Minor bugs fixed

Build6.0b20140523.71

* File buffering writing procedures have been completed
* Minor bugs fixed

Build5.0b20140512.70

* Added buffering for writing to files
* Changed some file writing function to improve software performance
* Minor bugs fixed 

Build5.0b20140512.69

* Parameter fileAmountSaveInterval has been added 
* Minor bugs fixed 

Build5.0b20140402.68

* New optimized Gillespie SSA algorithm has been implemented. 
* Minor bugs fixed 

Build4.82b20140327.67

* Documentation updated 

Build4.8b20140120.66

* Trush code has been removed from the Gillespie function.
* Documentation has been updated.  

Build4.8b20140120.65

* A possible bug in complex dissociation procedure has been fixed. 

Build4.8b20131212.64

* All the computational time stat procedures now work with normal variables insteaf of vectors. 
* Documentation Updated

Build4.8b20131210.63

* A possible bad_allock in complex second substrate association procedure has been fixed
* Documentation has been re-create according to the new version 
* Graphs have been added to the documentation  

Build4.8b20131209.62

* New try and catch have been added to monitor bugs and crashes. 

Build4.8b20131125.61

* A bug in the second step of the condensation has been fixed. 

Build4.8b20131026.60

* Spontaneous reactions have been added. 
* Several bugs Fixed

Build4.7b20131001.59

* Run time complex species dynamics information

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CAtalytic Reaction NEtworks Stochastic Simulator

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