##linux

1. install eigen and ViennaCL
2. git clone https://github.com/jrugis/cellsim_34_vcl.git
3. build the simulation code
4. cd cellsim_34_vcl/linux/build
5. edit Makefile
6. make
7. run a simulation (e.g. generic3d_03)
8. cd ../test
9. cp ../../test-ref/cell01m_HARMONIC_100p.msh cs.msh
10. cp ../../test-ref/generic3d_03-cs.dat cs.dat
11. ../generic3d_03
12. check the results
13. python cs_reduce.py
14. python cs_results_r.py
15. diff cR.bin ../../test-ref/generic3d_03-cR.bin

##pan

1. load required modules
2. module load intel/2015a
3. module load Python/3.5.0-intel-2015a
4. module load CUDA/7.5.18 (for the CUDA version only)
5. git clone https://github.com/jrugis/cellsim_34_vcl.git
6. build the simulation code
7. cd cellsim_34_vcl/pan/build
8. edit Makefile
9. make
10. run a simulation
11. cd ../test
12. edit run_test.sl
13. sbatch run_test.sl
14. check the results
15. python cs_reduce.py
16. python cs_results_r.py
17. diff cR.bin generic3d_03-cR.bin