Sequence analysis tools 1

Installation type make.sh

Just a small C program that can find ORFs from nucleotide sequences in (multi-)fasta format.

Just a small C program that can reverse/complement nucleotide sequences in (multi-)fasta format.

Just a small C program that can translate nucleotide sequence to amino acid sequence.

Just a small C program that can find short sequences from (multi-)fasta nucleotide sequence.

This program converts BLAST (legacy) text formatted result into table format. This prrogram cannot process blast+ results.

function : Convert blast textbase output into tabular format. swhitches -i : infile name. stdin if default. -o : outfile name. stdout if default. -e : errmessege output. stderr if default. -v : message level (0-2). 1 if default. -Q : number of query sequence to show. If 0 show all. 0 if default -D : number of matched database to show. If 0 show all. 0 if default -A : number of aligments to show. If 0 show all. 0 if default -S : allow Same score [T/F]. F if default. If select T allow more than -D specified number if the result show the Same score.

***** NOTICE ****** This program may find BLAST format err. If format error were found, this program will stop processing. If you DO WANT TO FORCE processing, try '-f T' option.