GitHub - verdurin/gimmemotifs: GimmeMotifs is a de novo motif prediction pipeline, especially suited for ChIP-seq datasets. It incorporates several existing motif prediction algorithms in an ensemble method to predict motifs and clusters these motifs using the WIC similarity scoring metric.

verdurin / gimmemotifs Public

forked from vanheeringen-lab/gimmemotifs

GimmeMotifs is a de novo motif prediction pipeline, especially suited for ChIP-seq datasets. It incorporates several existing motif prediction algorithms in an ensemble method to predict motifs and clusters these motifs using the WIC similarity scoring metric.

ncmls.eu/bioinfo/gimmemotifs/

MIT license

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Name		Name	Last commit message	Last commit date
Latest commit History 159 Commits
bg		bg
cfg		cfg
dist		dist
doc		doc
examples		examples
genes		genes
genome_index		genome_index
gimmemotifs		gimmemotifs
motif_databases		motif_databases
score_dists		score_dists
scripts		scripts
src		src
templates		templates
test		test
tools		tools
.gitignore		.gitignore
COPYING		COPYING
ChangeLog		ChangeLog
INSTALL		INSTALL
MANIFEST		MANIFEST
MANIFEST.in		MANIFEST.in
NEWS		NEWS
README		README
compile_externals.py		compile_externals.py
control2.5		control2.5
control2.6		control2.6
fabfile.py		fabfile.py
make_deb.py		make_deb.py
make_rpm.py		make_rpm.py
rules		rules
run_tests.py		run_tests.py
setup.cfg		setup.cfg
setup.py		setup.py
testpp.py		testpp.py

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See the GimmeMotifs documentation included in this package or at 
http://ncmls.eu/bioinfo/gimmemotifs/ for detailed installation instructions 
and usage examples.