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inspectPro.c
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inspectPro.c
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/***** inspectPro.c *******************************
* Description:
* Author: Bernhard Haubold, haubold@evolbio.mpg.de
* Date: Fri Oct 19 09:41:32 2012
**************************************************/
#include <stdio.h>
#include <stdlib.h>
#include <assert.h>
#include <string.h>
#include "interface.h"
#include "profileTree.h"
#include "eprintf.h"
#include "inspectPro.h"
void writeProfiles(Profile *pro, int n){
int i;
printf("#ID\tCount\tA\tC\tG\tT\n");
for(i=0;i<n;i++)
printf("%d\t%d\t%d\t%d\t%d\t%d\n",i,pro[i].n,
pro[i].profile[0],
pro[i].profile[1],
pro[i].profile[2],
pro[i].profile[3]);
}
void writeLengths(int *len, int n){
int i;
printf("#ID\tLength\n");
for(i=0;i<n;i++)
printf("%d\t%d\n",i,len[i]);
}
void writePositions(FILE *fp){
int numRead;
Position *pos;
printf("#Pos\tPro\n");
pos = (Position *)emalloc(sizeof(Position));
numRead = fread(pos,sizeof(Position),1,fp);
assert(numRead == 1);
while(!feof(fp)){
printf("%d\t%d\n",pos->pos,pos->pro);
numRead = fread(pos,sizeof(Position),1,fp);
}
free(pos);
}
void writeLikelihoods(FILE *fp){
int i;
Result *r;
double n, numRead, *lOne, *lTwo;
r = (Result *)emalloc(sizeof(Result));
printf("#id\tl_1\tl_2\n");
numRead = fread(r,sizeof(Result),1,fp);
assert(numRead == 1);
numRead = fread(&n,sizeof(double),1,fp);
lOne = (double *)emalloc(n*sizeof(double));
lTwo = (double *)emalloc(n*sizeof(double));
numRead = fread(lOne,sizeof(double),n,fp);
assert(numRead == n);
numRead = fread(lTwo,sizeof(double),n,fp);
assert(numRead == n);
for(i=0;i<n;i++)
printf("%d\t%.3e\t%.3e\n",i,lOne[i],lTwo[i]);
free(r);
free(lOne);
free(lTwo);
}
void scanFile(FILE *fp, Args *args){
char *tag;
int numRead, *lengths;
Profile *profiles;
int n;
tag = (char *)emalloc(3*sizeof(char));
numRead = fread(tag,sizeof(char),3,fp);
assert(numRead == 3);
while(!feof(fp)){
if(strcmp(tag,"sum")==0){
numRead = fread(&n,sizeof(int),1,fp);
assert(numRead == 1);
profiles = (Profile *)emalloc(n*sizeof(Profile));
numRead = fread(profiles,sizeof(Profile),n,fp);
assert(numRead == n);
writeProfiles(profiles, n);
free(profiles);
}else if(strcmp(tag,"con")==0){
numRead = fread(&n,sizeof(int),1,fp);
assert(numRead == 1);
lengths = (int *)emalloc(n*sizeof(int));
numRead = fread(lengths,sizeof(int),n,fp);
assert(numRead == n);
writeLengths(lengths, n);
free(lengths);
}else if(strcmp(tag,"pos")==0){
writePositions(fp);
}else if(strcmp(tag,"lik")==0){
writeLikelihoods(fp);
}else
assert(0);
numRead = fread(tag,sizeof(char),3,fp);
}
free(tag);
}
int main(int argc, char *argv[]){
int i;
char *version;
Args *args;
FILE *fp;
version = "0.3";
setprogname2("inspectPro");
args = getArgs(argc, argv);
if(args->v)
printSplash(version);
if(args->h || args->e)
printUsage(version);
if(args->numInputFiles == 0){
fp = stdin;
scanFile(fp, args);
}else{
for(i=0;i<args->numInputFiles;i++){
fp = efopen(args->inputFiles[i],"rb");
scanFile(fp, args);
fclose(fp);
}
}
free(args);
free(progname());
return 0;
}