GitHub - Osaft90/RNAlocmin: Finds local minima of RNA + constructs barrier tree

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 89 Commits
Makefile		Makefile
README.txt		README.txt
RNAlocmin.cpp		RNAlocmin.cpp
RNAlocmin.ggo		RNAlocmin.ggo
RNAlocmin.h		RNAlocmin.h
barrier_tree.cpp		barrier_tree.cpp
barrier_tree.h		barrier_tree.h
findpath_pk.cpp		findpath_pk.cpp
findpath_pk.h		findpath_pk.h
flood.cpp		flood.cpp
flood.h		flood.h
globals.cpp		globals.cpp
globals.h		globals.h
hash_util.cpp		hash_util.cpp
hash_util.h		hash_util.h
main.cpp		main.cpp
move_set_inside.c		move_set_inside.c
move_set_inside.h		move_set_inside.h
move_set_pk.cpp		move_set_pk.cpp
move_set_pk.h		move_set_pk.h
neighbourhood.cpp		neighbourhood.cpp
neighbourhood.h		neighbourhood.h
pknots.cpp		pknots.cpp
pknots.h		pknots.h
treeplot.cpp		treeplot.cpp
treeplot.h		treeplot.h

Repository files navigation

RNAlocmin
=========

Finds local minima of RNA + constructs barrier tree


Installation
============

First make sure that you have ViennaRNA package installed and that paths in Makefile: 

"ViennaRNA" points to header files ("H" directory in ViennaRNA)
"ViennaLIB" points to "libRNA.a" library

Then make sure you have "gengetopt" installed and your g++ compiler supports c++11 standard.
Then simple "make" should do it.