Computational Molecular Phenotyping (CMP) is a micromolecular profiling technology. Micromolecules can be quantitatively probed with hapten-specific IgG reagents with subcellular resolution. CMP is the fusion of three technology platforms: Anti-hapten IgG libraries, tissue array fabrication, and computational pattern recognition. CMP profiles multiple metabolites in every cell, concurrently discovers and phenotypes cell classes, tracks cell state, and maps disease sequelae in any tissue or organism.

This codebase implements an interface to clustering and visualizing cell classes from CMP image data. It was created for the Marc/Jones Lab by Josh Cates (SCI Institute) as part of a project with the TVC Software Development Center.