• CMake >= 2.8
• Boost
• Vaa3D/v3d_external

• CMake >= 2.8
• google-glog
• OpenCV
• Boost

$ cd vaa3d
$ nano SIGEN.pro # edit `VAA3DPATH` variable
$ qmake
$ make

libSIGEN.* will be located in SIGEN_ROOT/vaa3d/build. Please put libSIGEN.* in vaa3d/plugins/neuron_tracing/SIGEN directory.

$ mkdir build
$ cd build
$ cmake -DCMAKE_BUILD_TYPE=Release -DBUILD_MAIN=ON ..
$ make

If you run cmake . in project top directory, CMakeFiles, CMakeCache.txt, cmake_install.cmake, Makefile will be located in undesirable directories.

$ mkdir build
$ cd build
$ cmake -DCMAKE_BUILD_TYPE=Debug -DBUILD_MAIN=ON ..
$ make
$ make test

If you run cmake . in project top directory, CMakeFiles, CMakeCache.txt, cmake_install.cmake, Makefile will be located in undesirable directories.

• Interpolation (VT, DT)
• Clipping (level)
• Smoothing (level)

This software is released under the MIT License.

Copyright (c) 2016 Sho Iizuka

• Yamasaki, T., Isokawa, T., Matsui, N., Ikeno, H. and Kanzaki, R.: Reconstruction and simulation for three-dimensional morphological structure of insect neurons, Neurocomputing, Vol.69, pp.1043-1047 (2006). [link]