Molecular dynamic project

Common:

• Area split (24h)
• binary traces (1h)
• Windows build (8h)

Visualizer:

• trace rewind forward/backward (1h)
• trace speed (1h)
• particle color from velocity (2h)

Optimization:

• Native with OMP (port to platforms) (3h)
• Native with TBB (5h)
• OpenCL: avoid global barrier after each iteration (?)
• MPI: depends on area split (8h)

Code cleanup

• Move old code to reference directory and use it only it tests (3h)

C++ compiler with C++11 support
Boost
Python (optional)

git clone https://github.com/asavonic/moldynam.git
cd moldynam
git submodule update --init --recursive

Linux:
Debian: apt-get install g++ cmake libglew-dev libxrandr-dev libxi-dev libxxf86vm-dev

cd moldynam
mkdir build
cd build
cmake ..
make install

or you can build it with python script automatically

export MD_ROOT=<path to moldynam root>
python $MD_ROOT/__env/mkbuild.py

Windows:
MSVS2012 or higher required for build.

If you already have Boost installed then specify path to it in BOOST_ROOT variable for CMake
If not, see Build Boost on Windows section

Download and unpack the latest version: http://www.boost.org/users/download/
Go to this unpacked directory and run:
bootstrap
b2 variant=release,debug link=static runtime-link=static stage