Calibration code for Timepix assemblies

Hi guys !

So this is the sum of the code

Here is a short description of the different scripts

CLICdp preffered style for plots

This file read the X Y C txt file produced by pixelman and create a tree with the data

This script produce text files containing the peak position of each pixek for various sources, take the tree from previous file as input.

This file make the final surrogate fit for each pixel and output a txt file with the ABCD parameters for the surrogate fit

This script apply the calibration to data and produce a calibrated cluster tree

This script produce calibrated spectrum plots for 3 methods : Global calibration (one surrogate fit for all the pixels together) , pixel-per-pixel calibration and pixel-per-pixel+clustered calibration

This is a library with all the core function for reading and writing trees, clustering, cluster class etc ....

C++ implementation of the script to fill the single pixel spectrum histogram for each pixel for each sources

C++ implementation of the algo applying Calibration to the trees, speed-up a lot the code

Short script to inspect and plot parameters of the final calibration files

plot the TOT peak value for a given source for the matrix

plot the global calibration fit + data

Setup to run the scripts on lxplus

script to submit the analysis to the batch

the dataset can be found on lxplus at :

Fluorescence -> /afs/cern.ch/work/m/mbenoit/public/LNLS_May2014_Data/16-05-14_MX1_Fluo

Sources (CalibTree root files) -> /afs/cern.ch/work/m/mbenoit/public/LNLS_Analysis/SinglePixelAnalysis/root_files