The samogwas project is organized structurally as follows:

• dependencies: external resources needed to build the project:
  • BOOST project
  • Pro-BT library
• document: all related document
• core: core source code of the project.
  • include: headers
    • clustering: related to clustering algorithms involving distance/similarity matrix
      • DBSCAN
      • CAST
      • K-means
    • distance: interfaces for distance/similarity matrices
    • em: interfaces and implementations of multiple Expectation-Maximization algorithms
    • fltm: implementation of the FLTM algorithm
    • statistics: statistics-related code:
      • statistical tests for association/correlation ( chi-squared, fisher's, g-test, etc..)
      • information theory related code
    • utils
      • helpful helpers code
  • src: source code
• projects:
  • stand-alone or projects that depend on SAMOGWAS core project
• sample: sample dataset for test purposes
• tests: unit tests for core and evolving projects

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