A C program that picks up sequence(s) from multifasta sequences.

This program will fetch full/partial sequence(s) quickly from multifasta file. Before use this program, you have to make index files by typing

fpicupmakeindex.sh [FILENAME]

usage: -i: Infile name. stdin if default. -o: Outfile name. stdout if default. -k: Keyword of sequence searching. -r: Region to pic up (from)-(to). All sequence ( 0-0 ) if default. -w: Letters per line. Display in one line if 0. Zero if default. -s: extract oligofasta from multifasta. to get from M-th to N-th sequence [-s M-N] (M <= N) to count number of sequence in amultifasta file use only -i option -l: File name of query List.

fpicup -i FILENAME -k "sequencename" -r 100-20

fpicup -i FILENAME -l LIST

cat LIST sequencename1 sequencename2 sequencename3 sequencename4 sequencename5