GitHub - xied75/bwa: Burrow-Wheeler Aligner on Windows x64

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 111 Commits
glibc_win64_flat		glibc_win64_flat
vstudio		vstudio
win64_util		win64_util
zlib		zlib
.gitignore		.gitignore
COPYING		COPYING
ChangeLog		ChangeLog
Makefile		Makefile
NEWS		NEWS
QSufSort.c		QSufSort.c
QSufSort.h		QSufSort.h
README		README
README.win		README.win
bamlite.c		bamlite.c
bamlite.h		bamlite.h
bntseq.c		bntseq.c
bntseq.h		bntseq.h
bwa.1		bwa.1
bwape.c		bwape.c
bwase.c		bwase.c
bwase.h		bwase.h
bwaseqio.c		bwaseqio.c
bwt.c		bwt.c
bwt.h		bwt.h
bwt_gen.c		bwt_gen.c
bwt_lite.c		bwt_lite.c
bwt_lite.h		bwt_lite.h
bwtaln.c		bwtaln.c
bwtaln.h		bwtaln.h
bwtgap.c		bwtgap.c
bwtgap.h		bwtgap.h
bwtindex.c		bwtindex.c
bwtio.c		bwtio.c
bwtmisc.c		bwtmisc.c
bwtsw2.h		bwtsw2.h
bwtsw2_aux.c		bwtsw2_aux.c
bwtsw2_chain.c		bwtsw2_chain.c
bwtsw2_core.c		bwtsw2_core.c
bwtsw2_main.c		bwtsw2_main.c
bwtsw2_pair.c		bwtsw2_pair.c
cs2nt.c		cs2nt.c
fastmap.c		fastmap.c
is.c		is.c
khash.h		khash.h
kseq.h		kseq.h
ksort.h		ksort.h
kstring.c		kstring.c
kstring.h		kstring.h
ksw.c		ksw.c
ksw.h		ksw.h
kvec.h		kvec.h
main.c		main.c
main.h		main.h
qualfa2fq.pl		qualfa2fq.pl
simple_dp.c		simple_dp.c
solid2fastq.pl		solid2fastq.pl
stdaln.c		stdaln.c
stdaln.h		stdaln.h
utils.c		utils.c
utils.h		utils.h
xa2multi.pl		xa2multi.pl

Repository files navigation

Released packages can be downloaded from SourceForge.net:

  http://sourceforge.net/projects/bio-bwa/files/

Introduction and FAQ are available at:

  http://bio-bwa.sourceforge.net

Manual page at:

  http://bio-bwa.sourceforge.net/bwa.shtml

Mailing list:

  bio-bwa-help@lists.sourceforge.net

To sign up:

  http://sourceforge.net/mail/?group_id=276243

Publications (Open Access):

  http://www.ncbi.nlm.nih.gov/pubmed/20080505
  http://www.ncbi.nlm.nih.gov/pubmed/19451168

Incomplete list of citations (via HubMed.org):

  http://www.hubmed.org/references.cgi?uids=20080505
  http://www.hubmed.org/references.cgi?uids=19451168

Related projects:

  http://pbwa.sourceforge.net/
  http://www.many-core.group.cam.ac.uk/projects/lam.shtml
  http://biodoop-seal.sourceforge.net/
  http://gitorious.org/bwa-cuda