コード例 #1
0
ファイル: run_eve.C プロジェクト: ATTPC/ATTPCROOTv2
void run_eve(TString  InputDataFile = "output.root",TString  OutputDataFile = "output.reco_display.root", TString unpackDir="/Unpack_GETDecoder2/")
{
  FairLogger *fLogger = FairLogger::GetLogger();
  fLogger -> SetLogToScreen(kTRUE);
  fLogger->SetLogVerbosityLevel("MEDIUM");
  TString dir = getenv("VMCWORKDIR");
  TString geoFile = "ATTPC_v1.1_geomanager.root";


  TString InputDataPath = dir + "/macro/"+ unpackDir + InputDataFile;
  TString OutputDataPath = dir + "/macro/"+ unpackDir + OutputDataFile;
  TString GeoDataPath = dir + "/geometry/" + geoFile;

  FairRunAna *fRun= new FairRunAna();
  fRun -> SetInputFile(InputDataPath);
  fRun -> SetOutputFile(OutputDataPath);
  fRun -> SetGeomFile(GeoDataPath);

  FairRuntimeDb* rtdb = fRun->GetRuntimeDb();
  FairParRootFileIo* parIo1 = new FairParRootFileIo();
  //parIo1->open("param.dummy.root");
  rtdb->setFirstInput(parIo1);

  FairRootManager* ioman = FairRootManager::Instance();

  ATEventManager *eveMan = new ATEventManager();
  ATEventDrawTask* eve = new ATEventDrawTask();
  eve->Set3DHitStyleBox();
  eve->SetMultiHit(100); //Set the maximum number of multihits in the visualization
  eve->SetSaveTextData();
  eve->UnpackHoughSpace();

  eveMan->AddTask(eve);
  eveMan->Init();
}
コード例 #2
0
void run_eveTransform_proto() 
{

   TString dir = getenv("VMCWORKDIR");
   TString protomapfile = "proto.map";
   TString protomapdir = dir + "/scripts/"+ protomapfile;
 

  FairLogger *fLogger = FairLogger::GetLogger();
  fLogger -> SetLogToScreen(kTRUE);
  fLogger->SetLogVerbosityLevel("MEDIUM");

  FairRunAna *fRun= new FairRunAna();
  fRun -> SetInputFile("output_proto.root");
  fRun -> SetOutputFile("output_proto.reco_display.root");

  FairRuntimeDb* rtdb = fRun->GetRuntimeDb();
  FairParRootFileIo* parIo1 = new FairParRootFileIo();
  parIo1->open("param.dummy_proto.root");
  rtdb->setFirstInput(parIo1);

  FairRootManager* ioman = FairRootManager::Instance();

  ATEventManager *eveMan = new ATEventManager();
  ATEventDrawTask* eve = new ATEventProtoDrawTask();
  eve->SetGeoOption("Prototype"); // Options: "ATTPC" - "Prototype"
  eve->SetProtoMap(protomapdir.Data());

  eveMan->AddTask(eve);
  eveMan->Init();                    
}
コード例 #3
0
void run_eve_proto_lite(TString  InputDataFile = "output_proto.root",TString  OutputDataFile = "output_proto.reco_display.root", TString unpackDir="/Unpack_GETDecoder2/")
{

   TString dir = getenv("VMCWORKDIR");
   TString protomapfile = "proto.map";
   TString protomapdir = dir + "/scripts/"+ protomapfile;
   TString geoFile = "ATTPC_Proto_v1.0_geomanager.root";

   TString InputDataPath = dir + "/macro/"+ unpackDir + InputDataFile;
   TString OutputDataPath = dir + "/macro/"+ unpackDir + OutputDataFile;
   TString GeoDataPath = dir + "/geometry/" + geoFile;


  FairLogger *fLogger = FairLogger::GetLogger();
  fLogger -> SetLogToScreen(kTRUE);
  fLogger->SetLogVerbosityLevel("MEDIUM");

  FairRunAna *fRun= new FairRunAna();
  fRun -> SetInputFile(InputDataPath);
  fRun -> SetOutputFile(OutputDataPath);
  fRun -> SetGeomFile(GeoDataPath);

  FairRuntimeDb* rtdb = fRun->GetRuntimeDb();
  FairParRootFileIo* parIo1 = new FairParRootFileIo();
  //parIo1->open("param.dummy_proto.root");
  rtdb->setFirstInput(parIo1);

  FairRootManager* ioman = FairRootManager::Instance();

  ATEventManagerProto *eveMan = new ATEventManagerProto();
  ATEventDrawTaskProto* eve = new ATEventDrawTaskProto();
  eve->Set3DHitStyleBox();
  eve->SetProtoMap(protomapdir.Data());


  eveMan->AddTask(eve);
  eveMan->Init();
}
コード例 #4
0
ファイル: run_trac_its.C プロジェクト: AliceO2Group/AliceO2
void run_trac_its(Int_t nEvents = 10, TString mcEngine = "TGeant3"){
        // Initialize logger
        FairLogger *logger = FairLogger::GetLogger();
        logger->SetLogVerbosityLevel("LOW");
        logger->SetLogScreenLevel("INFO");

        // Input and output file name
        std::stringstream inputfile, outputfile, paramfile;
        inputfile << "AliceO2_" << mcEngine << ".clus_" << nEvents << "_event.root";
        paramfile << "AliceO2_" << mcEngine << ".params_" << nEvents << ".root";
        outputfile << "AliceO2_" << mcEngine << ".trac_" << nEvents << "_event.root";

        // Setup timer
        TStopwatch timer;

        // Setup FairRoot analysis manager
        FairRunAna * fRun = new FairRunAna();
        FairFileSource *fFileSource = new FairFileSource(inputfile.str().c_str());
        fRun->SetSource(fFileSource);
        fRun->SetOutputFile(outputfile.str().c_str());

        // Setup Runtime DB
        FairRuntimeDb* rtdb = fRun->GetRuntimeDb();
        FairParRootFileIo* parInput1 = new FairParRootFileIo();
        parInput1->open(paramfile.str().c_str());
        rtdb->setFirstInput(parInput1);

        // Setup tracker
        // To run with n threads call AliceO2::ITS::CookedTrackerTask(n)
        AliceO2::ITS::CookedTrackerTask *trac = new AliceO2::ITS::CookedTrackerTask;

        fRun->AddTask(trac);

        fRun->Init();

        AliceO2::Field::MagneticField* fld = (AliceO2::Field::MagneticField*)fRun->GetField();
      	if (!fld) {
      	  std::cout << "Failed to get field instance from FairRunAna" << std::endl;
      	  return;
      	}
      	trac->setBz(fld->solenoidField()); //in kG

        timer.Start();
        fRun->Run();

        std::cout << std::endl << std::endl;

        // Extract the maximal used memory an add is as Dart measurement
        // This line is filtered by CTest and the value send to CDash
        FairSystemInfo sysInfo;
        Float_t maxMemory=sysInfo.GetMaxMemory();
        std::cout << "<DartMeasurement name=\"MaxMemory\" type=\"numeric/double\">";
        std::cout << maxMemory;
        std::cout << "</DartMeasurement>" << std::endl;

        timer.Stop();
        Double_t rtime = timer.RealTime();
        Double_t ctime = timer.CpuTime();

        Float_t cpuUsage=ctime/rtime;
        cout << "<DartMeasurement name=\"CpuLoad\" type=\"numeric/double\">";
        cout << cpuUsage;
        cout << "</DartMeasurement>" << endl;
        cout << endl << endl;
        cout << "Macro finished succesfully." << endl;

        std::cout << endl << std::endl;
        std::cout << "Output file is "    << outputfile.str() << std::endl;
        //std::cout << "Parameter file is " << parFile << std::endl;
        std::cout << "Real time " << rtime << " s, CPU time " << ctime
                  << "s" << endl << endl;
}
コード例 #5
0
void run_DiReLo(Int_t nofFiles, TString mcEngine="TGeant3" )
{
  FairLogger *logger = FairLogger::GetLogger();
 // logger->SetLogFileName("MyLog.log");
 // logger->SetLogToScreen(kTRUE);
//  logger->SetLogToFile(kTRUE);
  logger->SetLogVerbosityLevel("LOW");
//  logger->SetLogFileLevel("DEBUG4");
//  logger->SetLogScreenLevel("DEBUG");
  
  TString workDir = gSystem->WorkingDirectory();

  // Verbosity level (0=quiet, 1=event level, 2=track level, 3=debug)
  Int_t iVerbose = 0; // just forget about it, for the moment
  
  // Input file (MC events)
  //  TString inFile = "data/testrun_";
  //  inFile = inFile + mcEngine + ".root";
  
  // Parameter file
  //  TString parFile = "data/testparams_"; 
  //  parFile = parFile + mcEngine + ".root";

  // Output file
  TString outFile = Form("data/testDiReLo_%df_",nofFiles);
  outFile = outFile + mcEngine + ".root";
  
  // -----   Timer   --------------------------------------------------------
  TStopwatch timer;
  
  // -----   Reconstruction run   -------------------------------------------
  FairRunAna *fRun= new FairRunAna();
  fRun->SetInputFile(Form("file://%s/data/testrun_%s_f%d.root",workDir.Data(),mcEngine.Data(),0));
  for ( Int_t ifile = 1 ; ifile < nofFiles ; ifile++ ) {
    cout << "fRun->AddFile(....f" << ifile << ".root" << endl;
    fRun->AddFile   (Form("file://%s/data/testrun_%s_f%d.root",workDir.Data(),mcEngine.Data(),ifile));
  }

  fRun->SetOutputFile(outFile);
  
  FairRuntimeDb* rtdb = fRun->GetRuntimeDb();
  FairParRootFileIo* parInput1 = new FairParRootFileIo();

  TList* fnamelist = new TList();

  for ( Int_t ifile = 0 ; ifile < nofFiles ; ifile++ )
    fnamelist->Add(new TObjString(Form("%s/data/testpar_%s_f%d.root",workDir.Data(),mcEngine.Data(),ifile)));

  cout << "PAR LIST CREATED" << endl;
  parInput1->open(fnamelist);       
  //  parInput1->open(parFile.Data());

  rtdb->setFirstInput(parInput1);
  
  FairTestDetectorDigiTask* digiTask = new FairTestDetectorDigiTask();
  fRun->AddTask(digiTask);
  
  FairTestDetectorRecoTask* hitProducer = new FairTestDetectorRecoTask();
  fRun->AddTask(hitProducer);

  fRun->Init();

  timer.Start();
  fRun->Run();

  // -----   Finish   -------------------------------------------------------

  cout << endl << endl;

  // Extract the maximal used memory an add is as Dart measurement
  // This line is filtered by CTest and the value send to CDash
  FairSystemInfo sysInfo;
  Float_t maxMemory=sysInfo.GetMaxMemory();
  cout << "<DartMeasurement name=\"MaxMemory\" type=\"numeric/double\">";
  cout << maxMemory;
  cout << "</DartMeasurement>" << endl;

  timer.Stop();
  Double_t rtime = timer.RealTime();
  Double_t ctime = timer.CpuTime();

  Float_t cpuUsage=ctime/rtime;
  cout << "<DartMeasurement name=\"CpuLoad\" type=\"numeric/double\">";
  cout << cpuUsage;
  cout << "</DartMeasurement>" << endl;

  cout << endl << endl;
  cout << "Output file is "    << outFile << endl;
  cout << "Real time " << rtime << " s, CPU time " << ctime
       << "s" << endl << endl;
  cout << "Macro finished successfully." << endl;

  // ------------------------------------------------------------------------
}
コード例 #6
0
ファイル: run_reco.C プロジェクト: Kristallfee/FairRoot
void run_reco( TString mcEngine="TGeant3" )
{
  FairLogger *logger = FairLogger::GetLogger();
  logger->SetLogFileName("MyLog.log");
  logger->SetLogToScreen(kTRUE);
//  logger->SetLogToFile(kTRUE);
  logger->SetLogVerbosityLevel("LOW");
//  logger->SetLogFileLevel("DEBUG4");
  logger->SetLogScreenLevel("INFO");
  
  // Verbosity level (0=quiet, 1=event level, 2=track level, 3=debug)
  Int_t iVerbose = 0; // just forget about it, for the moment
  
  // Input file (MC events)
  TString inFile = "data/testdigi_";
  inFile = inFile + mcEngine + ".root";

  // Parameter file
  TString parFile = "data/testparams_"; 
  parFile = parFile + mcEngine + ".root";

  // Output file
  TString outFile = "data/testreco_";
  outFile = outFile + mcEngine + ".root";
  
  // -----   Timer   --------------------------------------------------------
  TStopwatch timer;
  
  // -----   Reconstruction run   -------------------------------------------
  FairRunAna *fRun= new FairRunAna();
  fRun->SetInputFile(inFile);
  fRun->SetOutputFile(outFile);
  
  FairRuntimeDb* rtdb = fRun->GetRuntimeDb();
  FairParRootFileIo* parInput1 = new FairParRootFileIo();
  parInput1->open(parFile.Data());
  rtdb->setFirstInput(parInput1);
  
  // -----   TorinoDetector hit  producers   ---------------------------------
  FairTestDetectorRecoTask* hitProducer = new FairTestDetectorRecoTask();
  fRun->AddTask(hitProducer);
  

  fRun->Init();

  timer.Start();
  fRun->Run();

  // -----   Finish   -------------------------------------------------------
  timer.Stop();
  Double_t rtime = timer.RealTime();
  Double_t ctime = timer.CpuTime();
  cout << endl << endl;
  cout << "Macro finished successfully." << endl;
  cout << "Output file is "    << outFile << endl;
  cout << "Parameter file is " << parFile << endl;
  cout << "Real time " << rtime << " s, CPU time " << ctime << " s" << endl;
  cout << endl;
  // ------------------------------------------------------------------------
  cout << " Test passed" << endl;
  cout << " All ok " << endl;

  exit(0);
}
コード例 #7
0
ファイル: run_digi_tpc.C プロジェクト: AliceO2Group/AliceO2
void run_digi_tpc(Int_t nEvents = 10, TString mcEngine = "TGeant3"){
        // Initialize logger
        FairLogger *logger = FairLogger::GetLogger();
        logger->SetLogVerbosityLevel("LOW");
        logger->SetLogScreenLevel("INFO");

        // Input and output file name
        std::stringstream inputfile, outputfile, paramfile;
        inputfile << "AliceO2_" << mcEngine << ".tpc.mc_" << nEvents << "_event.root";
        paramfile << "AliceO2_" << mcEngine << ".tpc.params_" << nEvents << ".root";
        outputfile << "AliceO2_" << mcEngine << ".tpc.digi_" << nEvents << "_event.root";

        // Setup timer
        TStopwatch timer;

        // Setup FairRoot analysis manager
        FairRunAna * fRun = new FairRunAna();
        FairFileSource *fFileSource = new FairFileSource(inputfile.str().c_str());
        fRun->SetSource(fFileSource);
        fRun->SetOutputFile(outputfile.str().c_str());

        // Setup Runtime DB
        FairRuntimeDb* rtdb = fRun->GetRuntimeDb();
        FairParRootFileIo* parInput1 = new FairParRootFileIo();
        parInput1->open(paramfile.str().c_str());
        rtdb->setFirstInput(parInput1);

      //  TGeoManager::Import("geofile_full.root");

        // Setup digitizer
        AliceO2::ITS::DigitizerTask *digi = new AliceO2::ITS::DigitizerTask;
        fRun->AddTask(digi);

        AliceO2::TPC::DigitizerTask *digiTPC = new AliceO2::TPC::DigitizerTask;
        fRun->AddTask(digiTPC);

        fRun->Init();

        timer.Start();
        fRun->Run();

        std::cout << std::endl << std::endl;

        // Extract the maximal used memory an add is as Dart measurement
        // This line is filtered by CTest and the value send to CDash
        FairSystemInfo sysInfo;
        Float_t maxMemory=sysInfo.GetMaxMemory();
        std::cout << "<DartMeasurement name=\"MaxMemory\" type=\"numeric/double\">";
        std::cout << maxMemory;
        std::cout << "</DartMeasurement>" << std::endl;

        timer.Stop();
        Double_t rtime = timer.RealTime();
        Double_t ctime = timer.CpuTime();

        Float_t cpuUsage=ctime/rtime;
        cout << "<DartMeasurement name=\"CpuLoad\" type=\"numeric/double\">";
        cout << cpuUsage;
        cout << "</DartMeasurement>" << endl;
        cout << endl << endl;
        std::cout << "Macro finished succesfully." << std::endl;
        std::cout << endl << std::endl;
        std::cout << "Output file is "    << outputfile.str() << std::endl;
        //std::cout << "Parameter file is " << parFile << std::endl;
        std::cout << "Real time " << rtime << " s, CPU time " << ctime
                  << "s" << endl << endl;


}
コード例 #8
0
ファイル: makeDummy.C プロジェクト: ATTPC/ATTPCROOTv2
void makeDummy(const Int_t nEvents = 10)
{
  gRandom -> SetSeed(time(0));
  
  //TString dir = gSystem->Getenv("SPIRITDIR");
  //TString geomdir = dir + "/geometry";
  //gSystem->Setenv("GEOMPATH", geomdir.Data());

  FairLogger *logger = FairLogger::GetLogger();
  logger->SetLogToScreen(kTRUE);
  logger->SetLogVerbosityLevel("MEDIUM");

  TString outFile = "mc.dummy.root"; 
  TString parFile = "param.dummy.root"; 

  // -----   Create simulation run   ----------------------------------------
  //
  FairRunSim* run = new FairRunSim();
  run->SetName("TGeant4");              // Transport engine
  run->SetOutputFile(outFile);          // Output file
  run->SetWriteRunInfoFile(kFALSE);  

  FairRuntimeDb* rtdb = run->GetRuntimeDb();

  ATVertexPropagator* vertex_prop = new ATVertexPropagator();

  // ------------------------------------------------------------------------
    
  // -----   Create geometry   ----------------------------------------------
  
  /*FairModule* cave= new FairCave("CAVE");
  cave->SetGeometryFileName("cave_vacuum.geo"); 
  run->AddModule(cave);
  
  FairModule* target= new FairTarget("SnTarget");
  target->SetGeometryFileName("target.geo"); 
  run->AddModule(target);
  
  FairDetector* spirit = new STDetector("STDetector", kTRUE);
  spirit->SetGeometryFileName("spirit_v03.1.root");
  run->AddModule(spirit);*/
    
    FairModule* cave= new AtCave("CAVE");
    cave->SetGeometryFileName("cave.geo");
    run->AddModule(cave);
    
    FairModule* magnet = new AtMagnet("Magnet");
    run->AddModule(magnet);
    
    FairModule* pipe = new AtPipe("Pipe");
    run->AddModule(pipe);
    
    FairDetector* ATTPC = new AtTpc("ATTPC", kTRUE);
    ATTPC->SetGeometryFileName("ATTPC_v1.1.root");
    //ATTPC->SetModifyGeometry(kTRUE);
    run->AddModule(ATTPC);
    
  // ------------------------------------------------------------------------

  run->SetMaterials("media.geo");      
    
  // -----   Create PrimaryGenerator   --------------------------------------
  FairPrimaryGenerator *primGen = new FairPrimaryGenerator();
  FairParticleGenerator *particleGen = new FairParticleGenerator(2112, 1, 0, 0, 0, 0, 0, 0);
  primGen->AddGenerator(particleGen);
  run->SetGenerator(primGen);  
  /*
  Int_t dnum=7;
  const int gennum=pid[dnum].size();
  cout << gennum << endl;
  FairParticleGenerator *fIongen[gennum];
  
  for (Int_t i=0; i<gennum; i++) {
    fIongen[i] = new FairParticleGenerator(pid[dnum][i],1,pxl[dnum][i],pyl[dnum][i],pzl[dnum][i],0.0,-21.33,-3.52);
    //cout << pid[dnum][i] << "\t" << pxl[dnum][i] << "\t" << pyl[dnum][i] << "\t" << pzl[dnum][i] << "\t" << kinl[dnum][i] << endl;
    primGen->AddGenerator(fIongen[i]);
  }


    //primGen->AddTrack(pdg,pionpC[0][i],pionpC[1][i],pionpC[2][i],pionrC[0][i]*1.0E-13,pionrC[1][i]*1.0E-13-21.33,pionrC[2][i]*1.0E-13-3.52);
    //fIongen[i] = new FairParticleGenerator(pdg,1,pionpC[0][i],pionpC[1][i],pionpC[2][i],pionrC[0][i]*1.0E-13,pionrC[1][i]*1.0E-13-21.33,pionrC[2][i]*1.0E-13-3.52);
  //fIongen[i] = new FairParticleGenerator(pdg,1,px,py,pz,0.0,-21.33,-3.52);
  //primGen->AddGenerator(fIongen[i]);
    //primGen->AddTrack(pdg,pionpC[0][i],pionpC[1][i],pionpC[2][i],pionrC[0][i]*1.0E-13,pionrC[1][i]*1.0E-13-21.33,pionrC[2][i]*1.0E-13-3.52);
    //}
  //}

  // if (partt==0) FairBoxGenerator* boxGen1 = new FairBoxGenerator(2212, 1);
  // if (partt==1) FairBoxGenerator* boxGen1 = new FairBoxGenerator(1000010020, 1);
  // if (partt==2) FairBoxGenerator* boxGen1 = new FairBoxGenerator(1000010030, 1);
  // if (partt==3) FairBoxGenerator* boxGen1 = new FairBoxGenerator(1000020030, 1);
  // if (partt==4) FairBoxGenerator* boxGen1 = new FairBoxGenerator(1000020040, 1);
  // if (partt==5) FairBoxGenerator* boxGen1 = new FairBoxGenerator(211, 1);
  // if (partt==6) FairBoxGenerator* boxGen1 = new FairBoxGenerator(-211, 1);
  // if (partt==7) FairBoxGenerator* boxGen1 = new FairBoxGenerator(11, 1);
  // if (partt==8) FairBoxGenerator* boxGen1 = new FairBoxGenerator(-11, 1);
  // //FairBoxGenerator* boxGen1 = new FairBoxGenerator(1000020040, 1);
  // boxGen1->SetPRange(0.25,0.5); //GeV/c ??
  // boxGen1->SetPhiRange(0.,360.); //degrees
  // boxGen1->SetThetaRange(0.,90.); //degrees
  // boxGen1->SetXYZ(0.,-21.33, -3.52); // cm 
  // primGen->AddGenerator(boxGen1);
    
  // ------------------------------------------------------------------------
    
  run->SetStoreTraj(kTRUE);
  */
    
  // -----   Run initialisation   -------------------------------------------
  run->Init();
  // ------------------------------------------------------------------------
    
  // -----   Runtime database   ---------------------------------------------
  Bool_t kParameterMerged = kTRUE;
  FairParRootFileIo* parOut = new FairParRootFileIo(kParameterMerged);
  parOut->open(parFile.Data());
  rtdb->setOutput(parOut);
  rtdb->saveOutput();
  // ------------------------------------------------------------------------
    
  // -----   Start run   ----------------------------------------------------
  run->Run(nEvents);
  // -----   Finish   -------------------------------------------------------
}
コード例 #9
0
ファイル: run_rad.C プロジェクト: Kristallfee/FairRoot
void run_rad(Int_t nEvents = 100, TString mcEngine="TGeant3")
{
  
  TString dir = gSystem->Getenv("VMCWORKDIR");
  TString tutdir = dir + "/rutherford/macros";

  TString tut_geomdir = dir + "/geometry";
  gSystem->Setenv("GEOMPATH",tut_geomdir.Data());

  TString tut_configdir = dir + "/gconfig";
  gSystem->Setenv("CONFIG_DIR",tut_configdir.Data());

  TString outDir  = "data";
  TString outFile = outDir + "/test1_";
  outFile = outFile + mcEngine + ".mc.root";

  TString parFile = outDir + "/params1_";    
  parFile = parFile + mcEngine + ".root";   

  // In general, the following parts need not be touched
  // ========================================================================

  // ----    Debug option   -------------------------------------------------
  gDebug = 0;
  // ------------------------------------------------------------------------

  // -----   Timer   --------------------------------------------------------
  TStopwatch timer;
  timer.Start();
  // ------------------------------------------------------------------------

   FairLogger *logger = FairLogger::GetLogger();
  // define log file name
  logger->SetLogFileName("MyLog.log");
  // log to screen and to file 
  logger->SetLogToScreen(kTRUE);
  logger->SetLogToFile(kTRUE);
  // Print very accurate output. Levels are LOW, MEDIUM and HIGH
  logger->SetLogVerbosityLevel("HIGH");
 
  // -----   Create simulation run   ----------------------------------------
  FairRunSim* run = new FairRunSim();
  run->SetName(mcEngine);              // Transport engine
  run->SetOutputFile(outFile);          // Output file
  FairRuntimeDb* rtdb = run->GetRuntimeDb();
  // ------------------------------------------------------------------------
  
  // -----   Create media   -------------------------------------------------
  run->SetMaterials("media.geo");       // Materials
  // ------------------------------------------------------------------------
  
  //----Start the radiation length manager ----------------------------------
  
  run->SetRadLenRegister(kTRUE);

  // -----   Create geometry   ----------------------------------------------

  FairModule* cave= new FairCave("CAVE");
  cave->SetGeometryFileName("cave_vacuum.geo"); 
  run->AddModule(cave);

  FairModule* target= new FairTarget("Target");
  target->SetGeometryFileName("target_rutherford.geo"); 
  run->AddModule(target);

  FairDetector* rutherford = new FairRutherford("RutherfordDetector", kFALSE);
  rutherford->SetGeometryFileName("rutherford.geo"); 
  run->AddModule(rutherford);
  // ------------------------------------------------------------------------

  // -----   Create PrimaryGenerator   --------------------------------------
  FairPrimaryGenerator* primGen = new FairPrimaryGenerator();
  run->SetGenerator(primGen);

  FairBoxGenerator* boxGen1 = new FairBoxGenerator(0, 1);
  boxGen1->SetPRange(.005,.005);
  boxGen1->SetPhiRange(0.,0.);
  boxGen1->SetThetaRange(-90.,90.);
  boxGen1->SetXYZ(0.,0.,-3.);
  primGen->AddGenerator(boxGen1);


  // ------------------------------------------------------------------------

  run->SetStoreTraj(kTRUE);

  // -----   Run initialisation   -------------------------------------------
  run->Init();
  // ------------------------------------------------------------------------
  
  // Set cuts for storing the trajectories.
  // Switch this on only if trajectories are stored.
  // Choose this cuts according to your needs, but be aware
  // that the file size of the output file depends on these cuts

  FairTrajFilter* trajFilter = FairTrajFilter::Instance();
 // trajFilter->SetStepSizeCut(0.01); // 1 cm
  // trajFilter->SetVertexCut(-2000., -2000., 4., 2000., 2000., 100.);
  // trajFilter->SetMomentumCutP(10e-3); // p_lab > 10 MeV
  // trajFilter->SetEnergyCut(0., 1.02); // 0 < Etot < 1.04 GeV
  trajFilter->SetStorePrimaries(kTRUE);
  trajFilter->SetStoreSecondaries(kTRUE);
  // ------------------------------------------------------------------------

  // -----   Runtime database   ---------------------------------------------

  Bool_t kParameterMerged = kTRUE;
  FairParRootFileIo* parOut = new FairParRootFileIo(kParameterMerged);
  parOut->open(parFile.Data());
  rtdb->setOutput(parOut);
  rtdb->saveOutput();
  rtdb->print();
  // ------------------------------------------------------------------------
   
  // -----   Start run   ----------------------------------------------------
  run->Run(nEvents);
  // ------------------------------------------------------------------------
  run->CreateGeometryFile("data/geofile_full.root");
  
  // -----   Finish   -------------------------------------------------------
  timer.Stop();
  Double_t rtime = timer.RealTime();
  Double_t ctime = timer.CpuTime();
  cout << endl << endl;
  cout << "Macro finished succesfully." << endl;
  cout << "Output file is "    << outFile << endl;
  cout << "Parameter file is " << parFile << endl;
  cout << "Real time " << rtime << " s, CPU time " << ctime 
       << "s" << endl << endl;
  // ------------------------------------------------------------------------
}