SBEToolbox

SBEToolbox (Systems Biology and Evolution Toolbox) is developed in MATLAB as a menu-driven UI software to determine various statistics of the biological network.

Some of its features include (but not limited to): algorithms to create random networks (small-world, ring lattice etc..), deduce clusters in the network (MCL, mCode, clusterOne) etc...

Short WIKI: https://wsgi-promis.tamu.edu/projects/sbetoolbox/wiki/SBEToolbox_User_Manual.

Some Screencasts: http://vimeo.com/64151952 and http://vimeo.com/63437114.

Contact us on Twitter (@SBEToolbox).

Reference

Konganti K, Wang G, Yang E, Cai JJ (2013). SBEToolbox: a Matlab Toolbox for Biological Network Analysis.* Evolutionary Bioinformatics 2013:9 355-362

Name		Name	Last commit message	Last commit date
Latest commit History 51 Commits
addins		addins
annotation		annotation
example_dataset		example_dataset
help		help
lib		lib
plugins		plugins
private		private
session		session
.gitignore		.gitignore
Contents.m		Contents.m
INSTALL.txt		INSTALL.txt
LICENSE.md		LICENSE.md
README.md		README.md
SBEGUI.fig		SBEGUI.fig
SBEGUI.m		SBEGUI.m
Search.fig		Search.fig
Search.m		Search.m
SelectionGUI.fig		SelectionGUI.fig
SelectionGUI.m		SelectionGUI.m
adj_matrix_gui.m		adj_matrix_gui.m
affinity_propagation.m		affinity_propagation.m
annotate_nodes.m		annotate_nodes.m
askScreenPreference.m		askScreenPreference.m
assortativitycoeff.m		assortativitycoeff.m
betweenness.m		betweenness.m
betweenness_mex.m		betweenness_mex.m
bfs.m		bfs.m
bridging_centrality.m		bridging_centrality.m
bridgingcoeff.m		bridgingcoeff.m
brokeringcoeff.m		brokeringcoeff.m
cdsbe.m		cdsbe.m
centrefigure.m		centrefigure.m
circle_layout.m		circle_layout.m
closeness_centrality.m		closeness_centrality.m
clusteringcoeff.m		clusteringcoeff.m
clusteronerun.m		clusteronerun.m
create_plugin.m		create_plugin.m
current_info_flow.m		current_info_flow.m
currentnetsessioninfo.m		currentnetsessioninfo.m
cytoscaperun.m		cytoscaperun.m
deduce_mcl_clusters.m		deduce_mcl_clusters.m
delta_centrality.m		delta_centrality.m
dispadjmat.m		dispadjmat.m
dkernel.m		dkernel.m
dynamic_clustering.m		dynamic_clustering.m
eccentricity_centrality.m		eccentricity_centrality.m
extractedge.m		extractedge.m
extractnode.m		extractnode.m
findAllPaths.m		findAllPaths.m
get_addins_dir.m		get_addins_dir.m
get_plugins_dir.m		get_plugins_dir.m
getcurrentnetsession.m		getcurrentnetsession.m
graph_clustercoeff.m		graph_clustercoeff.m
graph_density.m		graph_density.m
graph_diameter.m		graph_diameter.m
graph_efficiency.m		graph_efficiency.m
graph_gui.m		graph_gui.m
graph_meandist.m		graph_meandist.m
hierarchy.m		hierarchy.m
incidence.m		incidence.m
install.m		install.m
isGbig.m		isGbig.m
isgsymmetric.m		isgsymmetric.m
issimple.m		issimple.m
kclique.m		kclique.m
kcore.m		kcore.m
knottycentrality.m		knottycentrality.m
laplacian.m		laplacian.m
locavgcon.m		locavgcon.m
mcl.m		mcl.m
mcode.m		mcode.m
modmat.m		modmat.m
modularity_n06.m		modularity_n06.m
modularity_ws05.m		modularity_ws05.m
moduleid2net.m		moduleid2net.m
neighborhood_conn.m		neighborhood_conn.m
networkComponents.m		networkComponents.m
network_evolution.m		network_evolution.m
opensbematfile.m		opensbematfile.m
order2cc.m		order2cc.m
overviewplot.m		overviewplot.m
participationcoeff.m		participationcoeff.m
plot2svg.m		plot2svg.m
plot_curve.m		plot_curve.m
plotnet.m		plotnet.m
plotnet_curve.m		plotnet_curve.m
plotnet_edgewidth.m		plotnet_edgewidth.m
plotnet_treering.m		plotnet_treering.m
plugin_manage.m		plugin_manage.m
powerlawplot.m		powerlawplot.m
printdistmat.m		printdistmat.m
protovisrun.m		protovisrun.m
randnet_er.m		randnet_er.m
randnet_ph.m		randnet_ph.m
randnet_rl.m		randnet_rl.m
randnet_sw.m		randnet_sw.m
readmat2sbe.m		readmat2sbe.m
readnetsession.m		readnetsession.m
readpajek2sbe.m		readpajek2sbe.m
readsif2sbe.m		readsif2sbe.m

License

ANS-math/SBEToolbox

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