Repository with ProGenViz source code

ProGenViZ is a simple web-based program build to visualize, compare, search, order sequences against a reference, and annotate multiple prokaryotic genome sequences and contigs.

Necessary programs to install it locally:

• Python -> Version 2.7.3 or above
• Biopython -> Version 1.58 or above
• BLAST -> Version 2.2.25 or above
• nucmer -> Sequence alignemnt tool from the MUMmer package. Versao 3.07 or above. sudo apt-get install nucmer
• Perl -> Version 5.14.2 or above with the modules File::Slurp, File::Temp and CGI::Carp installed through CPAN.
• rsvg-convert -> Version 2.36.1 or above. Used to convert images from SVG to PDF or PNG.
• Prodigal -> Version 2.60 or above

Currently, the application is not fully functional using the Firefox browser.