Linda Odenthal-Hesse, Julien Dutheil, Fabian Klötzl, Bernhard Haubold
To build and install all programs execute the following steps. The first step is not required, if you download the latest release. Please note that libdivsufsort
, gsl
and tabix
are required prerequisites.
autoreconf -i
./configure
make
make install
For extensive installation instructions see the hotspotDoc.pdf.
Download the example data from our server or via the commandline.
make get-chr19-data-mus
asp -g ./data/mus/genome/ -s ./data/mus/vcf/ ./data/mus/exampleHotSpots19.txt
aso -g ./data/mus/genome/ -s ./data/mus/vcf/ ./data/mus/exampleHotSpots19.txt
aso -u -g ./data/mus/genome/ -s ./data/mus/vcf/ ./data/mus/exampleHotSpots19.txt
xov ./data/mus/exampleResults.txt
six
six | xov
Copyright (C) 2015, 2018 Bernhard Haubold
This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version.
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
In case of problems, file a bug or contact us via haubold@evolbio.mpg.de