/
watersheddecomposer.cpp
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/
watersheddecomposer.cpp
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#include "watersheddecomposer.h"
#include <algorithm>
#include <memory>
#include <QDoubleSpinBox>
#include <QFormLayout>
#include <QSpinBox>
#include <QTime>
#include "image.h"
#include "pixel.h"
#include "segment.h"
#include "segmentlist.h"
WaterShedDecomposer::WaterShedDecomposer() :
Decomposer("Watershed Decomposer")
{
populateSettingsLayout();
}
SegmentList WaterShedDecomposer::decompose(ImageColor const & image) const {
QTime time;
time.start();
// original image
image.save("WS1_original.png");
// filter image
time.restart();
ImageColor filtered = filterGauss(image, radiusGauss->value());
qDebug("Image filtered in %g seconds", time.restart()/1000.0);
filtered.save("WS2_filtered.png");
// calculate gradient magnitude map
time.restart();
ImageGray gradientMap = gradientMagnitude(filtered);
qDebug("Gradient magnitude map calculated in %g seconds", time.restart()/1000.0);
gradientMap.save("WS3_gradient.png");
// apply watershed transformation
time.restart();
SegmentList segments = watershed(gradientMap, image);
qDebug("Watershed transformation applied in %g seconds", time.restart()/1000.0);
qDebug(" Segments: %d", segments.size());
ImageColor debugOut(image.width(), image.height());
segments.copyToImageAVG(debugOut);
debugOut.save("WS4_transformed.png");
// merge similiar and small segments
time.restart();
int oldSegmentsSize;
do {
oldSegmentsSize = segments.size();
mergeSimiliarSegments(segments, epsilonMerge->value()*epsilonMerge->value());
mergeSmallSegments(segments, minSize->value());
} while (segments.size() != oldSegmentsSize);
qDebug("Segments merged in %g seconds", time.restart()/1000.0);
qDebug(" Segments: %d", segments.size());
segments.copyToImageAVG(debugOut);
debugOut.save("WS5_merged.png");
return segments;
}
SegmentList WaterShedDecomposer::decomposeBatch(ImageColor const & image, QString const &) const {
return decompose(image);
}
ImageColor WaterShedDecomposer::filterGauss(ImageColor const & image, int r) const {
return filterGaussSinglePass(filterGaussSinglePass(image, r), r);
}
ImageColor WaterShedDecomposer::filterGaussSinglePass(ImageColor const & image, int r) const {
r = std::max(1, r);
int n = (r<<1) + 1;
// create kernel
unsigned long long * kernel = new unsigned long long[n];
for (int i=0; i<r; ++i) {
kernel[i] = kernel[n-i-1] = nCr(n-1, i);
}
kernel[r] = nCr(n-1, r);
ImageColor filtered(image.height(), image.width());
for (int y=0; y<image.height(); ++y) {
for (int x=0; x<image.width(); ++x) {
Color color;
unsigned long long weights = 0;
for (int i=0; i<n; ++i) {
if (x-r+i >= 0 && x-r+i < image.width()) {
color += image.at(x-r+i, y) * kernel[i];
weights += kernel[i];
}
}
filtered.at(y, x) = color / double(weights);
}
}
delete[] kernel;
return filtered;
}
ImageGray WaterShedDecomposer::gradientMagnitude(ImageColor const & image) const {
ImageGray gmImage(image.width(), image.height());
// Frobenius norm on Jacobian matrix
for (int y=0; y<image.height(); ++y) {
for (int x=0; x<image.width(); ++x) {
gmImage.at(x, y) = Gray(sqrt((image.at(std::min(image.width()-1, x+1), y)-
image.at(std::max(0, x-1), y)).magnitudeSquared() +
(image.at(x, std::min(image.height()-1, y+1))-
image.at(x, std::max(0, y-1))).magnitudeSquared()));
}
}
// scaling just for debug
float max = 0.0;
for (int i=0; i<gmImage.area(); ++i) {
max = std::max(max, gmImage.at(i).l);
}
for (int i=0; i<gmImage.area(); ++i) {
gmImage.at(i).l *= 255.0/max;
}
return gmImage;
}
bool WaterShedDecomposer::lessThan(GradPixelRef const & a, GradPixelRef const & b) {
return a.gradientMagnitude < b.gradientMagnitude;
}
unsigned long long WaterShedDecomposer::nCr(int n, int r) const {
if (r<<1 > n) {
return nCr(n, n-r);
}
else {
unsigned long long result = 1;
for (int i=1; i<=r; ++i) {
result *= n - r + i;
result /= i;
}
return result;
}
}
void WaterShedDecomposer::populateSettingsLayout() {
radiusGauss = new QSpinBox();
radiusGauss->setRange(1, 31);
radiusGauss->setValue(31);
radiusGauss->setToolTip(QObject::tr("Kernel radius of the Gaussian blur filter"));
settingsLayout->addRow(QObject::tr("Gauß kernel radius"), radiusGauss);
minSize = new QSpinBox();
minSize->setRange(1, 1000);
minSize->setValue(50);
minSize->setToolTip(QObject::tr("The minimal allowed segment size (smaller segments will be merged)"));
settingsLayout->addRow(QObject::tr("Minimum size"), minSize);
epsilonMerge = new QDoubleSpinBox();
epsilonMerge->setRange(0.5, 50.0);
epsilonMerge->setValue(3.0);
epsilonMerge->setSingleStep(0.1);
epsilonMerge->setToolTip(QObject::tr("The minimum color space distance (nearer segments will be merged)"));
settingsLayout->addRow(QChar(949)+QObject::tr(" merge"), epsilonMerge);
}
SegmentList WaterShedDecomposer::watershed(ImageGray const & gradient,
ImageColor const & image) const {
SegmentList segments;
std::unique_ptr<int[]> labels(new int[image.area()]);
for (int i=0; i<image.area(); ++i) labels[i] = -1;
int offsets[]{-image.width(), -1, 1, image.width()};
QList<GradPixelRef> queue;
for (int i=0; i<gradient.area(); ++i) {
queue << GradPixelRef{gradient.at(i).l, i};
}
std::sort(queue.begin(), queue.end(), lessThan);
int label;
int lastLabel = -1;
int i, j;
QList<int> neighLbls;
Pixel * pixel;
Segment * segment;
foreach (GradPixelRef const & gradPix, queue) {
i = gradPix.index;
pixel = new Pixel(Position(i%image.width(), i/image.width()), image.at(i));
// gather neighbours
neighLbls.clear();
for (int o=0; o<4; ++o) {
j = i + offsets[o];
if (image.areNeighbours(i, j) && labels[j] > -1 && !neighLbls.contains(labels[j])) {
neighLbls << labels[j];
}
}
// treat pixel according to neighbour count
switch (neighLbls.size()) {
case 0: // new marker
labels[i] = ++lastLabel;
segment = new Segment();
segment->addPixel(pixel);
segments << segment;
break;
case 1: // add to basin
label = neighLbls.first();
labels[i] = label;
segments.at(label)->addPixel(pixel);
break;
default: // new watershed
// add pixel the segment of the nearest neighbour in color
double distMin = std::numeric_limits<double>::max();
double dist;
int jMin = 0;
for (int o=0; o<4; ++o) {
j = i + offsets[o];
if (image.areNeighbours(i, j) && labels[j] > -1) {
dist = (image.at(i)-image.at(j)).magnitudeSquared();
if (dist < distMin) {
distMin = dist;
jMin = j;
}
}
}
labels[i] = labels[jMin];
segments.at(labels[jMin])->addPixel(pixel);
// beneighbour the segments
for (int k=0; k<neighLbls.count()-1; ++k) {
for (int l=k+1; l<neighLbls.count(); ++l) {
segments.at(neighLbls.at(k))->addNeighbour(segments.at(neighLbls.at(l)));
segments.at(neighLbls.at(l))->addNeighbour(segments.at(neighLbls.at(k)));
}
}
break;
}
}
segments.calculateMeanColors();
return segments;
}