#What is blasr_libcpp#
Blasr_libcpp is a library used by blasr and other executables such as samtoh5, loadPulses for analyzing PacBio sequences. This library contains three sub-libraries, including pbdata, hdf and alignment:
- pbdata
- contains source code for handling Pacbio sequences and can build lib
libpbdata
.
- contains source code for handling Pacbio sequences and can build lib
- hdf
- contains source code for handling Pacbio hdf5 files (e.g., *.pls.h5, *.rgn.h5, *.bas.h5) and builds
libpbhdf
.
- contains source code for handling Pacbio hdf5 files (e.g., *.pls.h5, *.rgn.h5, *.bas.h5) and builds
- alignment
- contains source code for aligning Pacbio reads to target sequences used in blasr and builds
libblasr
.
- contains source code for aligning Pacbio reads to target sequences used in blasr and builds
For more information, see
The simplest way is:
NOPBBAM=1 ./configure.py
make -j all
That will skip pbbam, and it will download HDF5 headers.