eyalshiv/LinkedSelectionMap
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IMPORTANT NOTE - THIS IS NOW AN OBSOLETE VERSION OF THE REPO. PLEASE USE THE UP-TO-DATE REPO: https://github.com/sellalab/LinkedSelectionMaps/ Eyal Elyashiv September 2016 How to use this example package: The matlab script \LinkedSelectionMap\example\matlab\runLS_runInfrerence_example.m exemplifies the full usage of the inference scheme, applied to input data from Drosophila melanogaster's 2L chromosome. The script calls all the interface methods: - Initializing the configuration file - Calculating the maps of the effects of background selection (BS) and classic sweeps (CS) for a grid of fitness effects - Running the inference for a combined model of BS and CS - Outputting the inferred parameters and linked selection maps to files Note that local directories in the file runLS_filenames_example.m and in the head of runLS_runInfrerence_example.m should be modified to the relevant directory structure. Eyal Elyashiv December 2014
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Infers parameters of linked selection (background selection and selective sweeps) and constructs maps of its effects
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