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Required for align:

ICU library
CMake

Recommended:
Doxygen - for documentation
gtest - for the unit tests

out of source build:
- make a directory for the build (e.g. build/)
- for debug build:
  cmake ${SRC_DIR} -DINCLUDE_TESTS=1 -DINCLUDE_TAGS=1 -DCMAKE_BUILD_TYPE=Debug
- for normal build:
  cmake ${SRC_DIR}
- make
- for tests:
  make test

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Partial Alignment Tool

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