// // Main // int assembleMain(int argc, char** argv) { Timer* pTimer = new Timer("sga assemble"); parseAssembleOptions(argc, argv); assemble(); delete pTimer; return 0; }
// // Main // int assembleMain(int argc, char** argv) { Timer* pTimer = new Timer("StriDe assembly"); parseAssembleOptions(argc, argv); std::cout << "\n#--- Parameters ---#\n"; std::cout << "Kmer Size : " << opt::kmerLength << std::endl; std::cout << "Kmer Threshold : " << opt::kmerThreshold << std::endl; std::cout << "Original Read Length : " << opt::readLength << std::endl; std::cout << "Maximum Chimera Length : " << opt::maxChimeraLength << std::endl; std::cout << "Reliable Overlap Length: " << opt::credibleOverlapLength <<std::endl; std::cout << "Insert Size : " << opt::insertSize << std::endl; assemble(); delete pTimer; return 0; }