/* Benchmark certain kernel operations */
void
time_kernels (
struct vtx_data **A, /* matrix/graph being analyzed */
int n, /* number of rows/columns in matrix */
double *vwsqrt /* square roots of vertex weights */
)
{
extern int DEBUG_PERTURB; /* debug flag for matrix perturbation */
extern int PERTURB; /* randomly perturb to break symmetry? */
extern int NPERTURB; /* number of edges to perturb */
extern int DEBUG_TRACE; /* trace main execution path */
extern double PERTURB_MAX; /* maximum size of perturbation */
int i, beg, end;
double *dvec1, *dvec2, *dvec3;
float *svec1, *svec2, *svec3, *vwsqrt_float;
double norm_dvec, norm_svec;
double dot_dvec, dot_svec;
double time, time_dvec, time_svec;
double diff;
double factor, fac;
float factor_float, fac_float;
int loops;
double min_time, target_time;
double *mkvec();
float *mkvec_float();
void frvec(), frvec_float();
void vecran();
double ch_norm(), dot();
double norm_float(), dot_float();
double seconds();
void scadd(), scadd_float(), update(), update_float();
void splarax(), splarax_float();
void perturb_init(), perturb_clear();
if (DEBUG_TRACE > 0) {
printf("<Entering time_kernels>\n");
}
beg = 1;
end = n;
dvec1 = mkvec(beg, end);
dvec2 = mkvec(beg, end);
dvec3 = mkvec(beg - 1, end);
svec1 = mkvec_float(beg, end);
svec2 = mkvec_float(beg, end);
svec3 = mkvec_float(beg - 1, end);
if (vwsqrt == NULL) {
vwsqrt_float = NULL;
}
else {
vwsqrt_float = mkvec_float(beg - 1, end);
for (i = beg - 1; i <= end; i++) {
vwsqrt_float[i] = vwsqrt[i];
}
}
vecran(dvec1, beg, end);
vecran(dvec2, beg, end);
vecran(dvec3, beg, end);
for (i = beg; i <= end; i++) {
svec1[i] = dvec1[i];
svec2[i] = dvec2[i];
svec3[i] = dvec3[i];
}
/* Set number of loops so that ch_norm() takes about one second. This should
insulate against inaccurate timings on faster machines. */
loops = 1;
time_dvec = 0;
min_time = 0.5;
target_time = 1.0;
while (time_dvec < min_time) {
time = seconds();
for (i = loops; i; i--) {
norm_dvec = ch_norm(dvec1, beg, end);
}
time_dvec = seconds() - time;
if (time_dvec < min_time) {
loops = 10 * loops;
}
}
loops = (target_time / time_dvec) * loops;
if (loops < 1)
loops = 1;
printf(" Kernel benchmarking\n");
printf("Time (in seconds) for %d loops of each operation:\n\n", loops);
printf("Routine Double Float Discrepancy Description\n");
printf("------- ------ ----- ----------- -----------\n");
/* Norm operation */
time = seconds();
for (i = loops; i; i--) {
norm_dvec = ch_norm(dvec1, beg, end);
}
time_dvec = seconds() - time;
time = seconds();
for (i = loops; i; i--) {
norm_svec = norm_float(svec1, beg, end);
}
time_svec = seconds() - time;
diff = norm_dvec - norm_svec;
printf("norm %6.2f %6.2f %14.5e", time_dvec, time_svec, diff);
printf(" 2 norm\n");
/* Dot operation */
time = seconds();
for (i = loops; i; i--) {
dot_dvec = dot(dvec1, beg, end, dvec2);
}
time_dvec = seconds() - time;
time = seconds();
for (i = loops; i; i--) {
dot_svec = dot_float(svec1, beg, end, svec2);
}
time_svec = seconds() - time;
diff = dot_dvec - dot_svec;
printf("dot %6.2f %6.2f %14.5e", time_dvec, time_svec, diff);
printf(" scalar product\n");
/* Scadd operation */
factor = 1.01;
factor_float = factor;
fac = factor;
time = seconds();
for (i = loops; i; i--) {
scadd(dvec1, beg, end, fac, dvec2);
fac = -fac; /* to keep things in scale */
}
time_dvec = seconds() - time;
fac_float = factor_float;
time = seconds();
for (i = loops; i; i--) {
scadd_float(svec1, beg, end, fac_float, svec2);
fac_float = -fac_float; /* to keep things in scale */
}
time_svec = seconds() - time;
diff = checkvec(dvec1, beg, end, svec1);
printf("scadd %6.2f %6.2f %14.5e", time_dvec, time_svec, diff);
printf(" vec1 <- vec1 + alpha*vec2\n");
/* Update operation */
time = seconds();
for (i = loops; i; i--) {
update(dvec1, beg, end, dvec2, factor, dvec3);
}
time_dvec = seconds() - time;
time = seconds();
for (i = loops; i; i--) {
update_float(svec1, beg, end, svec2, factor_float, svec3);
}
time_svec = seconds() - time;
diff = checkvec(dvec1, beg, end, svec1);
printf("update %6.2f %6.2f %14.2g", time_dvec, time_svec, diff);
printf(" vec1 <- vec2 + alpha*vec3\n");
/* splarax operation */
if (PERTURB) {
if (NPERTURB > 0 && PERTURB_MAX > 0.0) {
perturb_init(n);
if (DEBUG_PERTURB > 0) {
printf("Matrix being perturbed with scale %e\n", PERTURB_MAX);
}
}
else if (DEBUG_PERTURB > 0) {
printf("Matrix not being perturbed\n");
}
}
time = seconds();
for (i = loops; i; i--) {
splarax(dvec1, A, n, dvec2, vwsqrt, dvec3);
}
time_dvec = seconds() - time;
time = seconds();
for (i = loops; i; i--) {
splarax_float(svec1, A, n, svec2, vwsqrt_float, svec3);
}
time_svec = seconds() - time;
diff = checkvec(dvec1, beg, end, svec1);
printf("splarax %6.2f %6.2f %14.5e", time_dvec, time_svec, diff);
printf(" sparse matrix vector multiply\n");
if (PERTURB && NPERTURB > 0 && PERTURB_MAX > 0.0) {
perturb_clear();
}
printf("\n");
/* Free memory */
frvec(dvec1, 1);
frvec(dvec2, 1);
frvec(dvec3, 0);
frvec_float(svec1, 1);
frvec_float(svec2, 1);
frvec_float(svec3, 0);
if (vwsqrt_float != NULL) {
frvec_float(vwsqrt_float, beg - 1);
}
}
void
lanczos_FO (
struct vtx_data **A, /* graph data structure */
int n, /* number of rows/colums in matrix */
int d, /* problem dimension = # evecs to find */
double **y, /* columns of y are eigenvectors of A */
double *lambda, /* ritz approximation to eigenvals of A */
double *bound, /* on ritz pair approximations to eig pairs of A */
double eigtol, /* tolerance on eigenvectors */
double *vwsqrt, /* square root of vertex weights */
double maxdeg, /* maximum degree of graph */
int version /* 1 = standard mode, 2 = inverse operator mode */
)
{
extern FILE *Output_File; /* output file or NULL */
extern int DEBUG_EVECS; /* print debugging output? */
extern int DEBUG_TRACE; /* trace main execution path */
extern int WARNING_EVECS; /* print warning messages? */
extern int LANCZOS_MAXITNS; /* maximum Lanczos iterations allowed */
extern double BISECTION_SAFETY; /* safety factor for bisection algorithm */
extern double SRESTOL; /* resid tol for T evec comp */
extern double DOUBLE_MAX; /* Warning on inaccurate computation of evec of T */
extern double splarax_time; /* time matvecs */
extern double orthog_time; /* time orthogonalization work */
extern double tevec_time; /* time tridiagonal eigvec work */
extern double evec_time; /* time to generate eigenvectors */
extern double ql_time; /* time tridiagonal eigval work */
extern double blas_time; /* time for blas (not assembly coded) */
extern double init_time; /* time for allocating memory, etc. */
extern double scan_time; /* time for scanning bounds list */
extern double debug_time; /* time for debug computations and output */
int i, j; /* indicies */
int maxj; /* maximum number of Lanczos iterations */
double *u, *r; /* Lanczos vectors */
double *Aq; /* sparse matrix-vector product vector */
double *alpha, *beta; /* the Lanczos scalars from each step */
double *ritz; /* copy of alpha for tqli */
double *workj; /* work vector (eg. for tqli) */
double *workn; /* work vector (eg. for checkeig) */
double *s; /* eigenvector of T */
double **q; /* columns of q = Lanczos basis vectors */
double *bj; /* beta(j)*(last element of evecs of T) */
double bis_safety; /* real safety factor for bisection algorithm */
double Sres; /* how well Tevec calculated eigvecs */
double Sres_max; /* Maximum value of Sres */
int inc_bis_safety; /* need to increase bisection safety */
double *Ares; /* how well Lanczos calculated each eigpair */
double *inv_lambda; /* eigenvalues of inverse operator */
int *index; /* the Ritz index of an eigenpair */
struct orthlink *orthlist = NULL; /* vectors to orthogonalize against in Lanczos */
struct orthlink *orthlist2 = NULL; /* vectors to orthogonalize against in Symmlq */
struct orthlink *temp; /* for expanding orthogonalization list */
double *ritzvec=NULL; /* ritz vector for current iteration */
double *zeros=NULL; /* vector of all zeros */
double *ones=NULL; /* vector of all ones */
struct scanlink *scanlist; /* list of fields for min ritz vals */
struct scanlink *curlnk; /* for traversing the scanlist */
double bji_tol; /* tol on bji estimate of A e-residual */
int converged; /* has the iteration converged? */
double time; /* current clock time */
double shift, rtol; /* symmlq input */
long precon, goodb, nout; /* symmlq input */
long checka, intlim; /* symmlq input */
double anorm, acond; /* symmlq output */
double rnorm, ynorm; /* symmlq output */
long istop, itn; /* symmlq output */
double macheps; /* machine precision calculated by symmlq */
double normxlim; /* a stopping criteria for symmlq */
long itnmin; /* enforce minimum number of iterations */
int symmlqitns; /* # symmlq itns */
double *wv1=NULL, *wv2=NULL, *wv3=NULL; /* Symmlq work space */
double *wv4=NULL, *wv5=NULL, *wv6=NULL; /* Symmlq work space */
long long_n; /* long int copy of n for symmlq */
int ritzval_flag = 0; /* status flag for ql() */
double Anorm; /* Norm estimate of the Laplacian matrix */
int left, right; /* ranges on the search for ritzvals */
int memory_ok; /* TRUE as long as don't run out of memory */
double *mkvec(); /* allocates space for a vector */
double *mkvec_ret(); /* mkvec() which returns error code */
double dot(); /* standard dot product routine */
struct orthlink *makeorthlnk(); /* make space for entry in orthog. set */
double ch_norm(); /* vector norm */
double Tevec(); /* calc evec of T by linear recurrence */
struct scanlink *mkscanlist(); /* make scan list for min ritz vecs */
double lanc_seconds(); /* current clock timer */
int symmlq_(), get_ritzvals();
void setvec(), vecscale(), update(), vecran(), strout();
void splarax(), scanmin(), scanmax(), frvec(), orthogonalize();
void orthog1(), orthogvec(), bail(), warnings(), mkeigvecs();
if (DEBUG_TRACE > 0) {
printf("<Entering lanczos_FO>\n");
}
if (DEBUG_EVECS > 0) {
if (version == 1) {
printf("Full orthogonalization Lanczos, matrix size = %d\n", n);
}
else {
printf("Full orthogonalization Lanczos, inverted operator, matrix size = %d\n", n);
}
}
/* Initialize time. */
time = lanc_seconds();
if (n < d + 1) {
bail("ERROR: System too small for number of eigenvalues requested.",1);
/* d+1 since don't use zero eigenvalue pair */
}
/* Allocate Lanczos space. */
maxj = LANCZOS_MAXITNS;
u = mkvec(1, n);
r = mkvec(1, n);
Aq = mkvec(1, n);
ritzvec = mkvec(1, n);
zeros = mkvec(1, n);
setvec(zeros, 1, n, 0.0);
workn = mkvec(1, n);
Ares = mkvec(1, d);
inv_lambda = mkvec(1, d);
index = smalloc((d + 1) * sizeof(int));
alpha = mkvec(1, maxj);
beta = mkvec(1, maxj + 1);
ritz = mkvec(1, maxj);
s = mkvec(1, maxj);
bj = mkvec(1, maxj);
workj = mkvec(1, maxj + 1);
q = smalloc((maxj + 1) * sizeof(double *));
scanlist = mkscanlist(d);
if (version == 2) {
/* Allocate Symmlq space all in one chunk. */
wv1 = smalloc(6 * (n + 1) * sizeof(double));
wv2 = &wv1[(n + 1)];
wv3 = &wv1[2 * (n + 1)];
wv4 = &wv1[3 * (n + 1)];
wv5 = &wv1[4 * (n + 1)];
wv6 = &wv1[5 * (n + 1)];
/* Set invariant symmlq parameters */
precon = FALSE; /* FALSE until we figure out a good way */
goodb = FALSE; /* should be FALSE for this application */
checka = FALSE; /* if don't know by now, too bad */
intlim = n; /* set to enforce a maximum number of Symmlq itns */
itnmin = 0; /* set to enforce a minimum number of Symmlq itns */
shift = 0.0; /* since just solving rather than doing RQI */
symmlqitns = 0; /* total number of Symmlq iterations */
nout = 0; /* Effectively disabled - see notes in symmlq.f */
rtol = 1.0e-5; /* requested residual tolerance */
normxlim = DOUBLE_MAX; /* Effectively disables ||x|| termination criterion */
long_n = n; /* copy to long for linting */
}
/* Initialize. */
vecran(r, 1, n);
if (vwsqrt == NULL) {
/* whack one's direction from initial vector */
orthog1(r, 1, n);
/* list the ones direction for later use in Symmlq */
if (version == 2) {
orthlist2 = makeorthlnk();
ones = mkvec(1, n);
setvec(ones, 1, n, 1.0);
orthlist2->vec = ones;
orthlist2->pntr = NULL;
}
}
else {
/* whack vwsqrt direction from initial vector */
orthogvec(r, 1, n, vwsqrt);
if (version == 2) {
/* list the vwsqrt direction for later use in Symmlq */
orthlist2 = makeorthlnk();
orthlist2->vec = vwsqrt;
orthlist2->pntr = NULL;
}
}
beta[1] = ch_norm(r, 1, n);
q[0] = zeros;
bji_tol = eigtol;
orthlist = NULL;
Sres_max = 0.0;
Anorm = 2 * maxdeg; /* Gershgorin estimate for ||A|| */
bis_safety = BISECTION_SAFETY;
inc_bis_safety = FALSE;
init_time += lanc_seconds() - time;
/* Main Lanczos loop. */
j = 1;
converged = FALSE;
memory_ok = TRUE;
while ((j <= maxj) && (converged == FALSE) && memory_ok) {
time = lanc_seconds();
/* Allocate next Lanczos vector. If fail, back up one step and compute approx. eigvec. */
q[j] = mkvec_ret(1, n);
if (q[j] == NULL) {
memory_ok = FALSE;
if (DEBUG_EVECS > 0 || WARNING_EVECS > 0) {
strout("WARNING: Lanczos out of memory; computing best approximation available.\n");
}
if (j <= 2) {
bail("ERROR: Sorry, can't salvage Lanczos.",1);
/* ... save yourselves, men. */
}
j--;
}
vecscale(q[j], 1, n, 1.0 / beta[j], r);
blas_time += lanc_seconds() - time;
time = lanc_seconds();
if (version == 1) {
splarax(Aq, A, n, q[j], vwsqrt, workn);
}
else {
symmlq_(&long_n, &(q[j][1]), &wv1[1], &wv2[1], &wv3[1], &wv4[1], &Aq[1], &wv5[1],
&wv6[1], &checka, &goodb, &precon, &shift, &nout,
&intlim, &rtol, &istop, &itn, &anorm, &acond,
&rnorm, &ynorm, (double *) A, vwsqrt, (double *) orthlist2,
&macheps, &normxlim, &itnmin);
symmlqitns += itn;
if (DEBUG_EVECS > 2) {
printf("Symmlq report: rtol %g\n", rtol);
printf(" system norm %g, solution norm %g\n", anorm, ynorm);
printf(" system condition %g, residual %g\n", acond, rnorm);
printf(" termination condition %2ld, iterations %3ld\n", istop, itn);
}
}
splarax_time += lanc_seconds() - time;
time = lanc_seconds();
update(u, 1, n, Aq, -beta[j], q[j - 1]);
alpha[j] = dot(u, 1, n, q[j]);
update(r, 1, n, u, -alpha[j], q[j]);
blas_time += lanc_seconds() - time;
time = lanc_seconds();
if (vwsqrt == NULL) {
orthog1(r, 1, n);
}
else {
orthogvec(r, 1, n, vwsqrt);
}
orthogonalize(r, n, orthlist);
temp = orthlist;
orthlist = makeorthlnk();
orthlist->vec = q[j];
orthlist->pntr = temp;
beta[j + 1] = ch_norm(r, 1, n);
orthog_time += lanc_seconds() - time;
time = lanc_seconds();
left = j/2;
right = j - left + 1;
if (inc_bis_safety) {
bis_safety *= 10;
inc_bis_safety = FALSE;
}
ritzval_flag = get_ritzvals(alpha, beta+1, j, Anorm, workj+1,
ritz, d, left, right, eigtol, bis_safety);
/* ... have to off-set beta and workj since full orthogonalization
indexes these from 1 to maxj+1 whereas selective orthog.
indexes them from 0 to maxj */
if (ritzval_flag != 0) {
bail("ERROR: Both Sturm bisection and QL failed.",1);
/* ... give up. */
}
ql_time += lanc_seconds() - time;
/* Convergence check using Paige bji estimates. */
time = lanc_seconds();
for (i = 1; i <= j; i++) {
Sres = Tevec(alpha, beta, j, ritz[i], s);
if (Sres > Sres_max) {
Sres_max = Sres;
}
if (Sres > SRESTOL) {
inc_bis_safety = TRUE;
}
bj[i] = s[j] * beta[j + 1];
}
tevec_time += lanc_seconds() - time;
time = lanc_seconds();
if (version == 1) {
scanmin(ritz, 1, j, &scanlist);
}
else {
scanmax(ritz, 1, j, &scanlist);
}
converged = TRUE;
if (j < d)
converged = FALSE;
else {
curlnk = scanlist;
while (curlnk != NULL) {
if (bj[curlnk->indx] > bji_tol) {
converged = FALSE;
}
curlnk = curlnk->pntr;
}
}
scan_time += lanc_seconds() - time;
j++;
}
j--;
/* Collect eigenvalue and bound information. */
time = lanc_seconds();
mkeigvecs(scanlist,lambda,bound,index,bj,d,&Sres_max,alpha,beta+1,j,s,y,n,q);
evec_time += lanc_seconds() - time;
/* Analyze computation for and report additional problems */
time = lanc_seconds();
if (DEBUG_EVECS>0 && version == 2) {
printf("\nTotal Symmlq iterations %3d\n", symmlqitns);
}
if (version == 2) {
for (i = 1; i <= d; i++) {
lambda[i] = 1.0/lambda[i];
}
}
warnings(workn, A, y, n, lambda, vwsqrt, Ares, bound, index,
d, j, maxj, Sres_max, eigtol, u, Anorm, Output_File);
debug_time += lanc_seconds() - time;
/* Free any memory allocated in this routine. */
time = lanc_seconds();
frvec(u, 1);
frvec(r, 1);
frvec(Aq, 1);
frvec(ritzvec, 1);
frvec(zeros, 1);
if (vwsqrt == NULL && version == 2) {
frvec(ones, 1);
}
frvec(workn, 1);
frvec(Ares, 1);
frvec(inv_lambda, 1);
sfree(index);
frvec(alpha, 1);
frvec(beta, 1);
frvec(ritz, 1);
frvec(s, 1);
frvec(bj, 1);
frvec(workj, 1);
if (version == 2) {
frvec(wv1, 0);
}
while (scanlist != NULL) {
curlnk = scanlist->pntr;
sfree(scanlist);
scanlist = curlnk;
}
for (i = 1; i <= j; i++) {
frvec(q[i], 1);
}
while (orthlist != NULL) {
temp = orthlist->pntr;
sfree(orthlist);
orthlist = temp;
}
while (version == 2 && orthlist2 != NULL) {
temp = orthlist2->pntr;
sfree(orthlist2);
orthlist2 = temp;
}
sfree(q);
init_time += lanc_seconds() - time;
}