void hist_filler(const char *tag="QGSP_INCLXX_EMV_MOM_0.5_pip")
{
TString inFile = Form("output/data_%s.root",tag);
//TString outFile= Form("hists_clust_mult/hist_%s.root",tag);
TString outFile= Form("tmp_hist_%s.root",tag);
cout << "hist_filler inFile= " << inFile << endl;
cout << "hist_filler outFile= " << outFile << endl;
gROOT->Macro("$VMCWORKDIR/gconfig/rootlogon.C");
gSystem->Load("libhistfillertask");
FairLogger::GetLogger()->SetLogToFile(kFALSE);
FairRunAna* fRun = new FairRunAna();
FairRuntimeDb* rtdb = fRun->GetRuntimeDb();
fRun->SetInputFile(inFile);
fRun->SetOutputFile(outFile);
HistFillerTask *hft = new HistFillerTask(0.35,0.45);
fRun->AddTask(hft);
fRun->Init();
fRun->Run(1000,0);
}
void MCMonitoring(
const UInt_t num_events,
const TString base_name,
const TString base_path = "."
)
{
TStopwatch timer;
timer.Start();
const TString sim_file = base_path + "/r3bsim." + base_name + ".root";
const TString par_file = base_path + "/r3bpar." + base_name + ".root";
const TString out_file = base_path + "/mcmon." + base_name + ".root";
FairRunAna* run = new FairRunAna();
run->SetInputFile(sim_file);
run->SetOutputFile(out_file);
ConnectParFileToRuntimeDb(par_file, run->GetRuntimeDb());
run->AddTask(new R3BNeulandMCMon());
run->Init();
run->Run(0, num_events);
timer.Stop();
cout << endl;
cout << "Macro finished succesfully!" << endl;
cout << "Output file writen: " << out_file << endl;
cout << "Parameter file writen: " << par_file << endl;
cout << "Real time: " << timer.RealTime() << "s, CPU time: " << timer.CpuTime() << "s" << endl;
cout << endl;
}
void run(TString runNumber)
{
TStopwatch timer;
timer.Start();
TString dirIn1 = "/Volumes/Data/kresan/s438/data/";
TString dirIn2 = "/Volumes/Data/kresan/s438/tcal/";
TString dirOut = "/Volumes/Data/kresan/s438/digi/";
TString tdiffParName = "tdiff_" + runNumber + ".dat";
TString inputFileName1 = dirIn2 + runNumber + "_tcal.root"; // name of input file
TString parFileName = dirIn1 + "params_" + runNumber + "_raw.root"; // name of parameter file
TString outputFileName = dirOut + runNumber + "_digi.root"; // name of output file
// Create analysis run -------------------------------------------------------
FairRunAna* run = new FairRunAna();
run->SetInputFile(inputFileName1.Data());
run->SetOutputFile(outputFileName.Data());
// ---------------------------------------------------------------------------
// ----- Runtime DataBase info -----------------------------------------------
FairRuntimeDb* rtdb = run->GetRuntimeDb();
FairParRootFileIo* parIo1 = new FairParRootFileIo();
parIo1->open(parFileName);
rtdb->setFirstInput(parIo1);
rtdb->setOutput(parIo1);
rtdb->saveOutput();
// ---------------------------------------------------------------------------
// Tdiff calibration ---------------------------------------------------------
R3BLandTdiff* landTdiff = new R3BLandTdiff("LandTdiff", 1);
landTdiff->SetTdiffParName(tdiffParName.Data());
run->AddTask(landTdiff);
// ---------------------------------------------------------------------------
// Analysis ------------------------------------------------------------------
R3BLandAna* landAna = new R3BLandAna("LandAna", 1);
landAna->SetNofBars(100);
run->AddTask(landAna);
// ---------------------------------------------------------------------------
// Initialize ----------------------------------------------------------------
run->Init();
FairLogger::GetLogger()->SetLogScreenLevel("INFO");
// ---------------------------------------------------------------------------
// Run -----------------------------------------------------------------------
run->Run();
// ---------------------------------------------------------------------------
timer.Stop();
Double_t rtime = timer.RealTime();
Double_t ctime = timer.CpuTime();
cout << endl << endl;
cout << "Macro finished succesfully." << endl;
cout << "Output file is " << outputFileName << endl;
cout << "Parameter file is " << parFileName << endl;
cout << "Real time " << rtime << " s, CPU time " << ctime << "s" << endl << endl;
}
void AnalysisTaskXi(TString pre = "", int nevts=0, double mom=2.7){
TDatabasePDG::Instance()-> AddParticle("pbarpSystem","pbarpSystem", 1.9, kFALSE, 0.1, 0,"", 88888);
//Output File
if (pre==""){
TString Path = "/private/puetz/mysimulations/analysis/pbarp_Xiplus_Ximinus/idealtracking/10000_events/";
TString outPath = Path;
TString OutputFile = outPath + "analysis_output_test.root";
//Input simulation Files
TString inPIDFile = Path + "pid_complete.root";
TString inParFile = Path + "simparams.root";
}
else{
TString Path = pre;
TString outPath = Path + "_test_";
TString OutputFile = Path + "_analysis_output.root";
//Input simulation Files
TString inPIDFile = Path + "_pid_complete.root";
TString inParFile = Path + "_simparams.root";
}
TString PIDParFile = TString( gSystem->Getenv("VMCWORKDIR")) + "/macro/params/all.par";
//Initialization
FairLogger::GetLogger()->SetLogToFile(kFALSE);
FairRunAna* RunAna = new FairRunAna();
FairRuntimeDb* rtdb = RunAna->GetRuntimeDb();
RunAna->SetInputFile(inPIDFile);
//setup parameter database
FairParRootFileIo* parIo = new FairParRootFileIo();
parIo->open(inParFile);
FairParAsciiFileIo* parIoPID = new FairParAsciiFileIo();
parIoPID->open(PIDParFile.Data(),"in");
rtdb->setFirstInput(parIo);
rtdb->setSecondInput(parIoPID);
rtdb->setOutput(parIo);
RunAna->SetOutputFile(OutputFile);
// *** HERE OUR TASK GOES!
AnalysisTask *anaTask = new AnalysisTask();
anaTask->SetOutPutDir(outPath);
anaTask->SetNEvents(nevts);
anaTask->SetMom(mom);
RunAna->AddTask(anaTask);
RunAna->Init();
RunAna->Run(0.,1.);
exit(0);
void ana(int iplab = 0, int itype = 0, int brem = 1, int fid=0, int nevts = 10000) {
gSystem->Load("libanatda");
gSystem->ListLibraries();
//double plab[3] = {5.513, 8., 12.};
//const char *tt[2] = {"pip_pim","jpsi"};
//const char *cbrem[2] = {"raw","brem"};
//TString inPidFile = Form("output/pid/pbar_p_%s_pi0_plab%3.1f_%d.root", tt[itype], plab[iplab], fid);
//TString inParFile = Form("output/par/pbar_p_%s_pi0_plab%3.1f_%d.root", tt[itype], plab[iplab], fid);
//TString outFile = Form("test/ana_%s_%s_plab%3.1f_%d.root", tt[itype], cbrem[brem], plab[iplab], fid);
//cout << "inPidFile= " << inPidFile << endl;
//cout << "inParFile= " << inParFile << endl;
//cout << " tt= " << tt[itype] << " Outfile= " << outFile << endl;
const char *tt[2] = {"pi0pipm_dpm","pi0jpsi"};
const char *cbrem[2] = {"raw","brem"};
const char *dir = Form("/vol0/panda/work/jpsi_pi0/grid.out/tda/%s/runall.%d.%d", tt[itype], iplab, fid);
TString inPidFile = Form("%s/pid_complete.root",dir);
TString inParFile = Form("%s/simparams.root",dir);
TString outFile = Form("%s/ana_%s.root",dir,cbrem[brem]);
cout << "inPidFile= " << inPidFile << endl;
cout << "inParFile= " << inParFile << endl;
cout << "outFile= " << outFile << endl;
// *** initialization
FairLogger::GetLogger()->SetLogToFile(kFALSE);
FairRunAna* fRun = new FairRunAna();
fRun->SetInputFile(inPidFile);
FairRuntimeDb* rtdb = fRun->GetRuntimeDb();
FairParRootFileIo* parIO = new FairParRootFileIo();
parIO->open(inParFile);
FairParAsciiFileIo* parIOPid = new FairParAsciiFileIo();
parIOPid->open((TString(gSystem->Getenv("VMCWORKDIR"))+"/macro/params/all.par").Data(),"in");
rtdb->setFirstInput(parIO);
rtdb->setSecondInput(parIOPid);
rtdb->setOutput(parIO);
AnaTda *atda = new AnaTda(iplab, itype, brem);
atda->set_verbosity(0);
fRun->AddTask(atda);
fRun->SetOutputFile(outFile);
fRun->Init();
fRun->Run(0,nevts);
cout << "Done with: " << outFile << endl;
}
void run_reco()
{
FairLogger *logger = FairLogger::GetLogger();
logger -> SetLogFileName("genieLog.log");
logger -> SetLogToFile(kTRUE);
logger -> SetLogToScreen(kTRUE);
logger -> SetLogVerbosityLevel("MEDIUM");
FairRunAna* run = new FairRunAna();
run -> SetInputFile("data/test.mc_youngstest.root");
run -> SetOutputFile("ha.root");
TString file = "../parameters/ST.parameters.par";
FairRuntimeDb* rtdb = run->GetRuntimeDb();
FairParAsciiFileIo* parIo1 = new FairParAsciiFileIo();
parIo1 -> open(file.Data(), "in");
FairParRootFileIo* parIo2 = new FairParRootFileIo();
parIo2 -> open("./data/params_youngstest.root");
rtdb -> setFirstInput(parIo2);
rtdb -> setSecondInput(parIo1);
// STDigiPar *digiPar = (STDigiPar *) rtdb -> getContainer("STDigiPar");
STDecoderTask *decoderTask = new STDecoderTask();
decoderTask -> SetGraw("../../../cosmic_RIKEN_20140715/CoBo_AsAd0-2014-07-11T18-56-57.670_0000.graw");
decoderTask -> SetPedestal("../../../cosmic_RIKEN_20140715/CoBo_AsAd0-2014-07-11T18-56-57.670_0000.graw.root");
// decoderTask -> SetGraw("../../../cosmic_RIKEN_20140715/CoBo_AsAd0_2014-07-11T19-34-57.035_0000.graw");
// decoderTask -> SetPedestal("../../../cosmic_RIKEN_20140715/CoBo_AsAd0_2014-07-11T19-34-57.035_0000.graw.root");
decoderTask -> SetNumTbs(512);
decoderTask -> SetPersistence();
run -> AddTask(decoderTask);
STPSATask *psaTask = new STPSATask();
psaTask -> SetPersistence();
psaTask -> SetThreshold(100);
run -> AddTask(psaTask);
STHitClusteringTask *hcTask = new STHitClusteringTask();
hcTask -> SetPersistence();
hcTask -> SetVerbose(2);
run -> AddTask(hcTask);
run->Init();
run->Run(0, 194);
// run->Run(0, 194);
}
void findHits(TString inputFile="", TString outputFile="", Int_t nEvents = 0)
{
// ----- Timer --------------------------------------------------------
TStopwatch timer;
timer.Start();
// ------------------------------------------------------------------------
// ----- Create analysis run ----------------------------------------
FairRunAna* fRun = new FairRunAna();
fRun->SetInputFile(inputFile);
fRun->SetOutputFile(outputFile);
// Hit finder
R3BCalifaCrystalCal2Hit *hitFinder = new R3BCalifaCrystalCal2Hit();
// Select s438b Demonstrator Geometry
hitFinder->SelectGeometryVersion(0x438b);
hitFinder->SetAngularWindow(6.0*TMath::Pi()/180.0, 6.0*TMath::Pi()/180.0, 0);
fRun->AddTask(hitFinder);
fRun->Init();
FairLogger::GetLogger()->SetLogScreenLevel("INFO");
// FairLogger::GetLogger()->SetLogVerbosityLevel("HIGH");
fRun->Run(0,nEvents);
delete fRun;
// ----- Finish -------------------------------------------------------
timer.Stop();
Double_t rtime = timer.RealTime();
Double_t ctime = timer.CpuTime();
cout << endl << endl;
cout << "Macro finished succesfully." << endl;
cout << "Real time " << rtime << " s, CPU time " << ctime << " s" << endl;
cout << endl;
// ------------------------------------------------------------------------
}
radlen() {
string version = "TGeant3"; // OR "TGeant3";
TString outFile= Form("radlen_20k_%s.root",version.c_str());
cout << "hist_filler outFile= " << outFile << endl;
gROOT->Macro("$VMCWORKDIR/gconfig/rootlogon.C");
gSystem->Load("libradlendata");
FairLogger::GetLogger()->SetLogToFile(kFALSE);
FairRunAna* fRun = new FairRunAna();
FairRuntimeDb* rtdb = fRun->GetRuntimeDb();
//fRun->SetInputFile(inFile);
//fRun->SetInputFile(Form("sim_complete_20k_upto_%s.root",upto_det.c_str()));
//fRun->SetInputFile("sim_complete_upto_GEM_200k_evt.root");
fRun->SetInputFile(Form("output/sim_complete_%s_0.root",version.c_str()));
fRun->AddFile(Form("output/sim_complete_%s_1.root",version.c_str()));
fRun->AddFile(Form("output/sim_complete_%s_2.root",version.c_str()));
fRun->AddFile(Form("output/sim_complete_%s_3.root",version.c_str()));
fRun->AddFile(Form("output/sim_complete_%s_4.root",version.c_str()));
fRun->SetOutputFile(outFile);
RadLenData *rld = new RadLenData();
fRun->AddTask(rld);
fRun->Init();
fRun->Run(0,0);
}
void global_reco104(Int_t nEvents = 100, // number of events
Int_t seed = 555)
{
gRandom->SetSeed(seed);
TString script = TString(gSystem->Getenv("LIT_SCRIPT"));
TString parDir = TString(gSystem->Getenv("VMCWORKDIR")) + TString("/parameters");
// Input and output data
//TString dir = "/Users/andrey/Development/cbm/d/events/sts_tof/"; // Output directory
TString dir = "data/"; // Output directory
TString mcFile = dir + "auaumbias4.mc.root"; // MC transport file
TString parFile = dir + "auaumbias4.params.root"; // Parameters file
TString globalRecoFile = dir + "auaumbias4.global.reco.root"; // Output file with reconstructed tracks and hits
// Digi files
TList *parFileList = new TList();
TObjString stsDigiFile = parDir + "/sts/sts_v12b_std.digi.par"; // STS digi file
TString stsMatBudgetFileName = parDir + "/sts/sts_matbudget_v12b.root";
TString TofGeoPar = "/parameters/tof/par_tof_V12a.txt"; // 10 m version
// Directory for output results
TString resultDir = "./data/auaumbias104/";
// Reconstruction parameters
TString globalTrackingType = "branch"; // Global tracking type
TString stsHitProducerType = "real"; // STS hit producer type: real, ideal
// Normalization for efficiency
Int_t normStsPoints = 4;
Int_t normTrdPoints = 0;
Int_t normMuchPoints = 0;
Int_t normTofPoints = 1;
Int_t normTrdHits = 0;
Int_t normMuchHits = 0;
Int_t normTofHits = 1;
if (script == "yes") {
mcFile = TString(gSystem->Getenv("LIT_MC_FILE"));
parFile = TString(gSystem->Getenv("LIT_PAR_FILE"));
globalRecoFile = TString(gSystem->Getenv("LIT_GLOBAL_RECO_FILE"));
resultDir = TString(gSystem->Getenv("LIT_RESULT_DIR"));
}
parFileList->Add(&stsDigiFile);
Int_t iVerbose = 1;
TStopwatch timer;
timer.Start();
gROOT->LoadMacro("$VMCWORKDIR/macro/littrack/loadlibs.C");
loadlibs();
gSystem->Load("libHadron");
FairRunAna *run = new FairRunAna();
run->SetInputFile(mcFile);
run->SetOutputFile(globalRecoFile);
// ----- STS REAL reconstruction -----------------------------------------------
// ----- STS digitizer -------------------------------------------------
Double_t threshold = 4;
Double_t noiseWidth = 0.01;
Int_t nofBits = 12;
Double_t ElectronsPerAdc = 10.;
Double_t StripDeadTime = 0.1;
CbmStsDigitize* stsDigitize = new CbmStsDigitize("STS Digitiser", iVerbose);
stsDigitize->SetRealisticResponse();
stsDigitize->SetFrontThreshold (threshold);
stsDigitize->SetBackThreshold (threshold);
stsDigitize->SetFrontNoiseWidth(noiseWidth);
stsDigitize->SetBackNoiseWidth (noiseWidth);
stsDigitize->SetFrontNofBits (nofBits);
stsDigitize->SetBackNofBits (nofBits);
stsDigitize->SetFrontNofElPerAdc (ElectronsPerAdc);
stsDigitize->SetBackNofElPerAdc (ElectronsPerAdc);
stsDigitize->SetStripDeadTime (StripDeadTime);
run->AddTask(stsDigitize);
// -------------------------------------------------------------------------
FairTask* stsClusterFinder = new CbmStsClusterFinder("STS Cluster Finder",iVerbose);
run->AddTask(stsClusterFinder);
FairTask* stsFindHits = new CbmStsFindHits("STS Hit Finder", iVerbose);
run->AddTask(stsFindHits);
FairTask* stsMatchHits = new CbmStsMatchHits("STS Hit Matcher", iVerbose);
run->AddTask(stsMatchHits);
FairTask* kalman = new CbmKF();
run->AddTask(kalman);
CbmL1* l1 = new CbmL1();
l1->SetMaterialBudgetFileName(stsMatBudgetFileName);
run->AddTask(l1);
CbmStsTrackFinder* trackFinder = new CbmL1StsTrackFinder();
FairTask* findTracks = new CbmStsFindTracks(iVerbose, trackFinder);
run->AddTask(findTracks);
FairTask* stsMatchTracks = new CbmStsMatchTracks("STSMatchTracks", iVerbose);
run->AddTask(stsMatchTracks);
// ------------------------------------------------------------------------
// ------ TOF hits --------------------------------------------------------
CbmTofHitProducer* tofHitProd = new CbmTofHitProducer("TOF HitProducer", 1);
tofHitProd->SetParFileName(std::string(TofGeoPar));
run->AddTask(tofHitProd);
// ------------------------------------------------------------------------
// ------ Global track reconstruction -------------------------------------
CbmLitFindGlobalTracks* finder = new CbmLitFindGlobalTracks();
// Tracking method to be used
// "branch" - branching tracking
// "nn" - nearest neighbor tracking
// "nn_parallel" - nearest neighbor parallel tracking
finder->SetTrackingType(std::string(globalTrackingType));
// Hit-to-track merger method to be used
// "nearest_hit" - assigns nearest hit to the track
finder->SetMergerType("nearest_hit");
run->AddTask(finder);
// ------------------------------------------------------------------------
// ------------------------------------------------------------------------
CbmRichHitProducer* richHitProd = new CbmRichHitProducer();
//run->AddTask(richHitProd);
CbmRichReconstruction* richReco = new CbmRichReconstruction();
//run->AddTask(richReco);
CbmRichMatchRings* matchRings = new CbmRichMatchRings();
//run->AddTask(matchRings);
// ------------------------------------------------------------------------
// ----- Primary vertex finding ---------------------------------------
CbmPrimaryVertexFinder* pvFinder = new CbmPVFinderKF();
CbmFindPrimaryVertex* findVertex = new CbmFindPrimaryVertex(pvFinder);
run->AddTask(findVertex);
// ------------------------------------------------------------------------
// ----- Track finding QA check ------------------------------------
CbmLitTrackingQa* trackingQa = new CbmLitTrackingQa();
trackingQa->SetMinNofPointsSts(normStsPoints);
trackingQa->SetMinNofPointsTrd(normTrdPoints);
trackingQa->SetMinNofPointsMuch(normMuchPoints);
trackingQa->SetMinNofPointsTof(normTofPoints);
trackingQa->SetQuota(0.7);
trackingQa->SetMinNofHitsTrd(normTrdHits);
trackingQa->SetMinNofHitsMuch(normMuchHits);
trackingQa->SetMinNofHitsRich(7);
trackingQa->SetQuotaRich(0.6);
trackingQa->SetVerbose(normTofHits);
trackingQa->SetOutputDir(std::string(resultDir));
run->AddTask(trackingQa);
// ------------------------------------------------------------------------
CbmLitFitQa* fitQa = new CbmLitFitQa();
fitQa->SetMvdMinNofHits(0);
fitQa->SetStsMinNofHits(normStsPoints);
fitQa->SetMuchMinNofHits(normMuchPoints);
fitQa->SetTrdMinNofHits(normTrdPoints);
fitQa->SetOutputDir(std::string(resultDir));
run->AddTask(fitQa);
CbmLitClusteringQa* clusteringQa = new CbmLitClusteringQa();
clusteringQa->SetOutputDir(std::string(resultDir));
run->AddTask(clusteringQa);
CbmProduceDst *produceDst = new CbmProduceDst(); // in hadron
run->AddTask(produceDst);
CbmHadronAnalysis *HadronAna = new CbmHadronAnalysis(); // in hadron
run->AddTask(HadronAna);
// ----- Parameter database --------------------------------------------
FairRuntimeDb* rtdb = run->GetRuntimeDb();
FairParRootFileIo* parIo1 = new FairParRootFileIo();
FairParAsciiFileIo* parIo2 = new FairParAsciiFileIo();
parIo1->open(parFile.Data());
parIo2->open(parFileList, "in");
rtdb->setFirstInput(parIo1);
rtdb->setSecondInput(parIo2);
rtdb->setOutput(parIo1);
rtdb->saveOutput();
// ------------------------------------------------------------------------
// ----- Initialize and run --------------------------------------------
run->Init();
run->Run(0, nEvents);
// ------------------------------------------------------------------------
// ----- Finish -------------------------------------------------------
timer.Stop();
cout << endl << endl;
cout << "Macro finished successfully." << endl;
cout << "Test passed"<< endl;
cout << " All ok " << endl;
cout << "Output file is " << globalRecoFile << endl;
cout << "Parameter file is " << parFile << endl;
cout << "Real time " << timer.RealTime() << " s, CPU time " << timer.CpuTime() << " s" << endl;
cout << endl;
// ------------------------------------------------------------------------
}
void run_digi_dTof()
{
// ----- Files ---------------------------------------------------------------
TString inFile = "sim.root";
TString parFile = "par.root";
TString outFile = "r3bhits_dTof.root";
// ---------------------------------------------------------------------------
// ----- Timer ---------------------------------------------------------------
TStopwatch timer;
timer.Start();
// ---------------------------------------------------------------------------
// ----- Digitization --------------------------------------------------------
FairRunAna* run = new FairRunAna();
run->SetInputFile(inFile);
run->SetOutputFile(outFile);
// ---------------------------------------------------------------------------
// dTOF
R3BdTofDigitizer* dtof_digitizer = new R3BdTofDigitizer();
run->AddTask(dtof_digitizer);
dtof_digitizer->SetSigma_y( 1. );
dtof_digitizer->SetSigma_t( 0.03 );
dtof_digitizer->SetSigma_ELoss( 0.014 ); //0.0015
// ---------------------------------------------------------------------------
// ----- Runtime DataBase info -----------------------------------------------
FairRuntimeDb* rtdb = run->GetRuntimeDb();
FairParRootFileIo* parIo1 = new FairParRootFileIo();
parIo1->open(parFile.Data());
rtdb->setFirstInput(parIo1);
rtdb->setOutput(parIo1);
rtdb->saveOutput();
// ---------------------------------------------------------------------------
// ----- Intialise and run ---------------------------------------------------
run->Init();
run->Run();
// ---------------------------------------------------------------------------
// ----- Finish --------------------------------------------------------------
timer.Stop();
Double_t rtime = timer.RealTime();
Double_t ctime = timer.CpuTime();
cout << endl << endl;
cout << "Macro finished succesfully." << endl;
cout << "Output file writen: " << outFile << endl;
cout << "Parameter file writen " << parFile << endl;
cout << "Real time " << rtime << " s, CPU time " << ctime << " s" << endl;
cout << endl;
cout << " Test passed" << endl;
cout << " All ok " << endl;
cout << " Digitization successful." << endl;
// ---------------------------------------------------------------------------
RemoveGeoManager();
}
void run_trac_its(Int_t nEvents = 10, TString mcEngine = "TGeant3"){
// Initialize logger
FairLogger *logger = FairLogger::GetLogger();
logger->SetLogVerbosityLevel("LOW");
logger->SetLogScreenLevel("INFO");
// Input and output file name
std::stringstream inputfile, outputfile, paramfile;
inputfile << "AliceO2_" << mcEngine << ".clus_" << nEvents << "_event.root";
paramfile << "AliceO2_" << mcEngine << ".params_" << nEvents << ".root";
outputfile << "AliceO2_" << mcEngine << ".trac_" << nEvents << "_event.root";
// Setup timer
TStopwatch timer;
// Setup FairRoot analysis manager
FairRunAna * fRun = new FairRunAna();
FairFileSource *fFileSource = new FairFileSource(inputfile.str().c_str());
fRun->SetSource(fFileSource);
fRun->SetOutputFile(outputfile.str().c_str());
// Setup Runtime DB
FairRuntimeDb* rtdb = fRun->GetRuntimeDb();
FairParRootFileIo* parInput1 = new FairParRootFileIo();
parInput1->open(paramfile.str().c_str());
rtdb->setFirstInput(parInput1);
// Setup tracker
// To run with n threads call AliceO2::ITS::CookedTrackerTask(n)
AliceO2::ITS::CookedTrackerTask *trac = new AliceO2::ITS::CookedTrackerTask;
fRun->AddTask(trac);
fRun->Init();
AliceO2::Field::MagneticField* fld = (AliceO2::Field::MagneticField*)fRun->GetField();
if (!fld) {
std::cout << "Failed to get field instance from FairRunAna" << std::endl;
return;
}
trac->setBz(fld->solenoidField()); //in kG
timer.Start();
fRun->Run();
std::cout << std::endl << std::endl;
// Extract the maximal used memory an add is as Dart measurement
// This line is filtered by CTest and the value send to CDash
FairSystemInfo sysInfo;
Float_t maxMemory=sysInfo.GetMaxMemory();
std::cout << "<DartMeasurement name=\"MaxMemory\" type=\"numeric/double\">";
std::cout << maxMemory;
std::cout << "</DartMeasurement>" << std::endl;
timer.Stop();
Double_t rtime = timer.RealTime();
Double_t ctime = timer.CpuTime();
Float_t cpuUsage=ctime/rtime;
cout << "<DartMeasurement name=\"CpuLoad\" type=\"numeric/double\">";
cout << cpuUsage;
cout << "</DartMeasurement>" << endl;
cout << endl << endl;
cout << "Macro finished succesfully." << endl;
std::cout << endl << std::endl;
std::cout << "Output file is " << outputfile.str() << std::endl;
//std::cout << "Parameter file is " << parFile << std::endl;
std::cout << "Real time " << rtime << " s, CPU time " << ctime
<< "s" << endl << endl;
}
void califaAna_batch(Int_t nEvents=1, Int_t fGeoVer=1, Double_t fThres=0.000050,
Double_t fExpRes=5., Double_t fDelPolar=3.2, Double_t fDelAzimuthal=3.2) {
cout << "Running califaAna_batch with arguments:" <<endl;
cout << "Number of events: " << nEvents <<endl;
cout << "CALIFA geo version: " << fGeoVer <<endl;
cout << "Threshold: " << fThres <<endl<<endl;
cout << "Experimental resolution: " << fExpRes <<endl<<endl;
// In general, the following parts need not be touched
// ========================================================================
// ---- Debug option -------------------------------------------------
gDebug = 0;
// ------------------------------------------------------------------------
// ----- Timer --------------------------------------------------------
TStopwatch timer;
timer.Start();
// ------------------------------------------------------------------------
// ----- Create analysis run ----------------------------------------
FairRunAna* fRun = new FairRunAna();
FairRuntimeDb* rtdb = fRun->GetRuntimeDb();
FairParRootFileIo* parIo1 = new FairParRootFileIo();
parIo1->open("r3bpar.root");
rtdb->setFirstInput(parIo1);
rtdb->print();
fRun->SetInputFile("r3bsim.root");
fRun->SetOutputFile("califaAna.root");
// ----- Analysis routines for CALIFA
R3BCaloHitFinder* caloHF = new R3BCaloHitFinder();
//Selecting the geometry version
// 0- CALIFA 5.0, including BARREL and ENDCAP.
// 1- CALIFA 7.05, only BARREL
// 2- CALIFA 7.07, only BARREL
// 3- CALIFA 7.09, only BARREL (ongoing work)
// 4- CALIFA 7.17, only ENDCAP (in CsI[Tl])
// 5- CALIFA 7.07+7.17,
// 6- CALIFA 7.09+7.17, (ongoing work)
// 10- CALIFA 8.11, only BARREL (ongoing work)
// ...
caloHF->SelectGeometryVersion(fGeoVer);
//caloHF->SelectGeometryVersion(10);
caloHF->SetDetectionThreshold(fThres); //50 KeV [fThres in GeV]
caloHF->SetExperimentalResolution(fExpRes); //5% at 1 MeV
caloHF->SetAngularWindow(fDelPolar,fDelAzimuthal); //[0.25 around 14.3 degrees, 3.2 for the complete calorimeter]
fRun->AddTask(caloHF);
fRun->Init();
fRun->Run(0, nEvents);
// ----- Finish -------------------------------------------------------
timer.Stop();
Double_t rtime = timer.RealTime();
Double_t ctime = timer.CpuTime();
cout << endl << endl;
cout << "Macro finished succesfully." << endl;
cout << "Real time " << rtime << " s, CPU time " << ctime << " s" << endl;
cout << endl;
// ------------------------------------------------------------------------
}
void global_reco(Int_t nEvents = 100, Int_t seed = 555)
{
gRandom->SetSeed(seed);
TTree::SetMaxTreeSize(90000000000);
TString script = TString(gSystem->Getenv("LIT_SCRIPT"));
TString parDir = TString(gSystem->Getenv("VMCWORKDIR")) + TString("/parameters");
// Input and output data
TString dir = "events/much_anna_omega_8gev_10k/"; // Output directory
TString mcFile = dir + "mc.0000.root"; // MC transport file
TString parFile = dir + "param.0000.root"; // Parameters file
TString globalRecoFile = dir + "global.reco.0000.root"; // Output file with reconstructed tracks and hits
// Digi files
TList* parFileList = new TList();
TObjString stsDigiFile = parDir + "/sts/sts_v12b_std.digi.par"; // STS digi file
TObjString trdDigiFile = parDir + "/trd/trd_v13g.digi.par"; // TRD digi file
TString muchDigiFile = parDir + "/much/much_v12c.digi.root"; // MUCH digi file
TString stsMatBudgetFile = parDir + "/sts/sts_matbudget_v12b.root";
TObjString tofDigiFile = parDir + "/tof/tof_v13b.digi.par";// TOF digi file
// Reconstruction parameters
TString globalTrackingType = "nn"; // Global tracking type
TString trdHitProducerType = "smearing"; // TRD hit producer type: smearing, digi, clustering
TString muchHitProducerType = "advanced"; // MUCH hit producer type: simple, advanced
if (script == "yes") {
mcFile = TString(gSystem->Getenv("LIT_MC_FILE"));
parFile = TString(gSystem->Getenv("LIT_PAR_FILE"));
globalRecoFile = TString(gSystem->Getenv("LIT_GLOBAL_RECO_FILE"));
stsDigiFile = TString(gSystem->Getenv("LIT_STS_DIGI"));
trdDigiFile = TString(gSystem->Getenv("LIT_TRD_DIGI"));
muchDigiFile = TString(gSystem->Getenv("LIT_MUCH_DIGI"));
tofDigiFile = TString(gSystem->Getenv("LIT_TOF_DIGI"));
stsMatBudgetFile = TString(gSystem->Getenv("LIT_STS_MAT_BUDGET_FILE"));
}
parFileList->Add(&stsDigiFile);
parFileList->Add(&trdDigiFile);
parFileList->Add(&tofDigiFile);
Int_t iVerbose = 1;
TStopwatch timer;
timer.Start();
gROOT->LoadMacro("$VMCWORKDIR/macro/littrack/loadlibs.C");
loadlibs();
FairRunAna *run = new FairRunAna();
run->SetInputFile(mcFile);
run->SetOutputFile(globalRecoFile);
// ----- STS -------------------------------------------------
Double_t threshold = 4;
Double_t noiseWidth = 0.01;
Int_t nofBits = 12;
Double_t ElectronsPerAdc = 10.;
Double_t StripDeadTime = 0.1;
CbmStsDigitize* stsDigitize = new CbmStsDigitize("STS Digitiser", iVerbose);
stsDigitize->SetRealisticResponse();
stsDigitize->SetFrontThreshold(threshold);
stsDigitize->SetBackThreshold(threshold);
stsDigitize->SetFrontNoiseWidth(noiseWidth);
stsDigitize->SetBackNoiseWidth(noiseWidth);
stsDigitize->SetFrontNofBits(nofBits);
stsDigitize->SetBackNofBits(nofBits);
stsDigitize->SetFrontNofElPerAdc(ElectronsPerAdc);
stsDigitize->SetBackNofElPerAdc(ElectronsPerAdc);
stsDigitize->SetStripDeadTime(StripDeadTime);
run->AddTask(stsDigitize);
FairTask* stsClusterFinder = new CbmStsClusterFinder("STS Cluster Finder",iVerbose);
run->AddTask(stsClusterFinder);
FairTask* stsFindHits = new CbmStsFindHits("STS Hit Finder", iVerbose);
run->AddTask(stsFindHits);
FairTask* stsMatchHits = new CbmStsMatchHits("STS Hit Matcher", iVerbose);
run->AddTask(stsMatchHits);
FairTask* kalman = new CbmKF();
run->AddTask(kalman);
CbmL1* l1 = new CbmL1();
//l1->SetExtrapolateToTheEndOfSTS(true);
l1->SetMaterialBudgetFileName(stsMatBudgetFile);
run->AddTask(l1);
CbmStsTrackFinder* trackFinder = new CbmL1StsTrackFinder();
FairTask* findTracks = new CbmStsFindTracks(iVerbose, trackFinder);
run->AddTask(findTracks);
FairTask* stsMatchTracks = new CbmStsMatchTracks("STSMatchTracks", iVerbose);
run->AddTask(stsMatchTracks);
// ------------------------------------------------------------------------
if (IsMuch(parFile)) {
// -------- MUCH digitization ------------
CbmMuchDigitizeGem* digitize = new CbmMuchDigitizeGem(muchDigiFile.Data());
if (muchHitProducerType == "simple") {
digitize->SetAlgorithm(0);
} else if (muchHitProducerType == "advanced") {
digitize->SetAlgorithm(1);
}
run->AddTask(digitize);
CbmMuchFindHitsGem* findHits = new CbmMuchFindHitsGem(muchDigiFile.Data());
run->AddTask(findHits);
CbmMuchDigitizeStraws* strawDigitize = new CbmMuchDigitizeStraws("MuchDigitizeStraws", muchDigiFile.Data(), iVerbose);
run->AddTask(strawDigitize);
CbmMuchFindHitsStraws* strawFindHits = new CbmMuchFindHitsStraws("MuchFindHitsStraws", muchDigiFile.Data(), iVerbose);
strawFindHits->SetMerge(1);
run->AddTask(strawFindHits);
// -----------------------------------------------------------------
}
if (IsTrd(parFile)) {
// ----- TRD reconstruction-----------------------------------------
// Update of the values for the radiator F.U. 17.08.07
Int_t trdNFoils = 130; // number of polyetylene foils
Float_t trdDFoils = 0.0013; // thickness of 1 foil [cm]
Float_t trdDGap = 0.02; // thickness of gap between foils [cm]
Bool_t simpleTR = kTRUE; // use fast and simple version for TR production
CbmTrdRadiator *radiator = new CbmTrdRadiator(simpleTR, trdNFoils, trdDFoils, trdDGap);
if (trdHitProducerType == "smearing") {
CbmTrdHitProducerSmearing* trdHitProd = new CbmTrdHitProducerSmearing(radiator);
trdHitProd->SetUseDigiPar(false);
run->AddTask(trdHitProd);
} else if (trdHitProducerType == "digi") {
CbmTrdDigitizer* trdDigitizer = new CbmTrdDigitizer(radiator);
run->AddTask(trdDigitizer);
CbmTrdHitProducerDigi* trdHitProd = new CbmTrdHitProducerDigi();
run->AddTask(trdHitProd);
} else if (trdHitProducerType == "clustering") {
// ----- TRD clustering -----
CbmTrdDigitizerPRF* trdClustering = new CbmTrdDigitizerPRF("TRD Clusterizer", "TRD task", radiator, false, true);
run->AddTask(trdClustering);
CbmTrdClusterFinderFast* trdClusterfindingfast = new CbmTrdClusterFinderFast(true, true, false, 5.0e-7);
run->AddTask(trdClusterfindingfast);
CbmTrdHitProducerCluster* trdClusterHitProducer = new CbmTrdHitProducerCluster();
run->AddTask(trdClusterHitProducer);
// ----- End TRD Clustering -----
}
// ------------------------------------------------------------------------
}
if (IsTof(parFile)) {
// ------ TOF hits --------------------------------------------------------
CbmTofHitProducerNew* tofHitProd = new CbmTofHitProducerNew("TOF HitProducerNew",iVerbose);
tofHitProd->SetInitFromAscii(kFALSE);
run->AddTask(tofHitProd);
// ------------------------------------------------------------------------
}
// ------ Global track reconstruction -------------------------------------
CbmLitFindGlobalTracks* finder = new CbmLitFindGlobalTracks();
//CbmLitFindGlobalTracksParallel* finder = new CbmLitFindGlobalTracksParallel();
// Tracking method to be used
// "branch" - branching tracking
// "nn" - nearest neighbor tracking
// "nn_parallel" - nearest neighbor parallel tracking
finder->SetTrackingType(std::string(globalTrackingType));
// Hit-to-track merger method to be used
// "nearest_hit" - assigns nearest hit to the track
finder->SetMergerType("nearest_hit");
run->AddTask(finder);
if (IsTrd(parFile)) {
CbmTrdMatchTracks* trdMatchTracks = new CbmTrdMatchTracks();
run->AddTask(trdMatchTracks);
}
if (IsMuch(parFile)) {
CbmMuchMatchTracks* muchMatchTracks = new CbmMuchMatchTracks();
run->AddTask(muchMatchTracks);
}
// ----- Primary vertex finding --------------------------------------
CbmPrimaryVertexFinder* pvFinder = new CbmPVFinderKF();
CbmFindPrimaryVertex* findVertex = new CbmFindPrimaryVertex(pvFinder);
run->AddTask(findVertex);
// -----------------------------------------------------------------------
// ----- Parameter database --------------------------------------------
FairRuntimeDb* rtdb = run->GetRuntimeDb();
FairParRootFileIo* parIo1 = new FairParRootFileIo();
FairParAsciiFileIo* parIo2 = new FairParAsciiFileIo();
parIo1->open(parFile.Data());
parIo2->open(parFileList, "in");
rtdb->setFirstInput(parIo1);
rtdb->setSecondInput(parIo2);
rtdb->setOutput(parIo1);
rtdb->saveOutput();
// ------------------------------------------------------------------------
// ----- Initialize and run --------------------------------------------
run->Init();
run->Run(0, nEvents);
// ------------------------------------------------------------------------
// ----- Finish -------------------------------------------------------
timer.Stop();
cout << "Macro finished successfully." << endl;
cout << "Test passed"<< endl;
cout << " All ok " << endl;
cout << "Output file is " << globalRecoFile << endl;
cout << "Parameter file is " << parFile << endl;
cout << "Real time " << timer.RealTime() << " s, CPU time " << timer.CpuTime() << " s" << endl;
// ------------------------------------------------------------------------
}
void run_unpack_proto_v2(){
// ----- Timer --------------------------------------------------------
TStopwatch timer;
timer.Start();
// ------------------------------------------------------------------------
gSystem->Load("libXMLParser.so");
TString scriptfile = "LookupProto20150331.xml";
TString protomapfile = "proto.map";
TString dir = getenv("VMCWORKDIR");
TString scriptdir = dir + "/scripts/"+ scriptfile;
TString protomapdir = dir + "/scripts/"+ protomapfile;
TString geo = "proto_geo_hires.root";
FairLogger *logger = FairLogger::GetLogger();
logger -> SetLogFileName("ATTPCLog.log");
logger -> SetLogToFile(kTRUE);
logger -> SetLogToScreen(kTRUE);
logger -> SetLogVerbosityLevel("MEDIUM");
FairRunAna* run = new FairRunAna();
//run -> SetInputFile("mc.dummy_proto.root");
run -> SetOutputFile("output_proto.root");
//run -> SetGeomFile("../geometry/ATTPC_Proto_v1.0.root");
TString file = "../../parameters/AT.parameters.par";
FairRuntimeDb* rtdb = run->GetRuntimeDb();
FairParAsciiFileIo* parIo1 = new FairParAsciiFileIo();
parIo1 -> open(file.Data(), "in");
//FairParRootFileIo* parIo2 = new FairParRootFileIo();
//parIo2 -> open("param.dummy_proto.root");
// rtdb -> setFirstInput(parIo2);
rtdb -> setSecondInput(parIo1);
ATDecoderTask *decoderTask = new ATDecoderTask();
//decoderTask ->SetDebugMode(kTRUE);
decoderTask ->SetMapOpt(1); // ATTPC : 0 - Prototype: 1 |||| Default value = 0
//decoderTask -> AddData("/home/ayyadlim/Desktop/Yassid/ATTPC/Data/Notre_Dame_data/CoBo_AsAd0_2015-01-27T15_19_34.962_0000.graw");//12B
//decoderTask -> AddData("/home/ayyadlim/Desktop/Yassid/ATTPC/Data/Notre_Dame_data/CoBo_AsAd0_2015-01-27T07_16_00.696_0000.graw");
//decoderTask -> AddData("/Users/yassidayyad/Desktop/ATTPC/Data/Notre_Dame_data/CoBo_AsAd0_2015-01-27T15_19_34.962_0000.graw");
//decoderTask ->AddData("/home/ayyadlim/Desktop/Yassid/ATTPC/Data/Notre_Dame_data/CoBo_AsAd0_2015-01-26T19_33_23.451_0003.graw"); //12N
//decoderTask -> AddData("/home/ayyadlim/Desktop/Yassid/ATTPC/Data/Notre_Dame_data/CoBo_AsAd0_2015-01-28T07:02:50.291_0000.graw");//12B High Pressure
//decoderTask -> AddData("/home/ayyadlim/Desktop/Yassid/ATTPC/Data/Notre_Dame_data/CoBo_AsAd0_2015-01-28T16:56:24.135_0000.graw");//12B Low Pressure
decoderTask -> AddData("/home/ayyadlim/Desktop/Yassid/ATTPC/Data/TRIUMF/CoBo_AsAd0_2015-12-01T07_35_27.482_0009.graw");//8He TRIUMF
// decoderTask -> AddData("/home/ayyadlim/Desktop/Yassid/ATTPC/Data/Notre_Dame_data/10Be/CoBo_2013-02-21_12-52-57_0006.graw"); //10Be
//decoderTask -> AddData("/home/s1257/fair_install_ROOT6/data/CoBo_AsAd0_2015-12-03T05:47:43.571_0001.graw");//12B Low Pressure
//decoderTask -> AddData("/home/daq/Desktop/Data/run_0014/CoBo_AsAd0_2015-07-29T15_45_17.971_0000.graw");
//decoderTask->AddData("/home/daq/Desktop/Data/run_0028/CoBo_AsAd0_2015-07-29T19_02_32.783_0000.graw");
decoderTask ->SetGeo(geo.Data());
decoderTask ->SetProtoMap(protomapdir.Data());
decoderTask ->SetMap((Char_t const*) scriptdir.Data());
decoderTask -> SetPositivePolarity(kTRUE);
decoderTask -> SetFPNPedestal(6);
//decoderTask->SetInternalPedestal();
decoderTask -> SetNumTbs(512);
//decoderTask -> SetPersistence();
decoderTask -> SetGetRawEventMode(1);
run -> AddTask(decoderTask);
ATPSATask *psaTask = new ATPSATask();
psaTask -> SetPersistence();
psaTask -> SetBackGroundPeakFinder(kFALSE); // Suppress background of each pad for noisy data (Larger computing Time)
psaTask -> SetThreshold(20);
psaTask -> SetPeakFinder(); //Note: For the moment not affecting the prototype PSA Task
run -> AddTask(psaTask);
ATPhiRecoTask *phirecoTask = new ATPhiRecoTask();
phirecoTask -> SetPersistence();
run -> AddTask(phirecoTask);
/*ATHoughTask *HoughTask = new ATHoughTask();
HoughTask->SetPhiReco();
HoughTask->SetPersistence();
HoughTask->SetLinearHough();
HoughTask->SetRadiusThreshold(3.0); // Truncate Hough Space Calculation
//HoughTask ->SetCircularHough();
run ->AddTask(HoughTask);*/
run->Init();
run->Run(0,100); // Number must be lower than the number of events in dummy
// ----- Finish -------------------------------------------------------
timer.Stop();
Double_t rtime = timer.RealTime();
Double_t ctime = timer.CpuTime();
cout << endl << endl;
cout << "Macro finished succesfully." << endl;
cout << "Real time " << rtime << " s, CPU time " << ctime << " s" << endl;
cout << endl;
// ------------------------------------------------------------------------
}
void run_unpack_alpha
(TString dataFile = "runfiles/NSCL/alphas/alpha_run_0100.txt",TString parameterFile = "ATTPC.alpha.par",
TString mappath="/data/ar46/run_0085/")
{
// ----- Timer --------------------------------------------------------
TStopwatch timer;
timer.Start();
// ------------------------------------------------------------------------
gSystem->Load("libXMLParser.so");
// -----------------------------------------------------------------
// Set file names
TString scriptfile = "Lookup20150611.xml";
TString dir = getenv("VMCWORKDIR");
TString scriptdir = dir + "/scripts/"+ scriptfile;
TString dataDir = dir + "/macro/data/";
TString geomDir = dir + "/geometry/";
gSystem -> Setenv("GEOMPATH", geomDir.Data());
//TString inputFile = dataDir + name + ".digi.root";
//TString outputFile = dataDir + "output.root";
TString outputFile = "output.root";
//TString mcParFile = dataDir + name + ".params.root";
TString loggerFile = dataDir + "ATTPCLog.log";
TString digiParFile = dir + "/parameters/" + parameterFile;
TString geoManFile = dir + "/geometry/ATTPC_v1.2.root";
TString inimap = mappath + "inhib.txt";
TString lowgmap = mappath + "lowgain.txt";
TString xtalkmap = mappath + "beampads_e15503b.txt";
// -----------------------------------------------------------------
// Logger
FairLogger *fLogger = FairLogger::GetLogger();
fLogger -> SetLogFileName(loggerFile);
fLogger -> SetLogToScreen(kTRUE);
fLogger -> SetLogToFile(kTRUE);
fLogger -> SetLogVerbosityLevel("LOW");
FairRunAna* run = new FairRunAna();
run -> SetOutputFile(outputFile);
//run -> SetGeomFile("../geometry/ATTPC_Proto_v1.0.root");
run -> SetGeomFile(geoManFile);
FairRuntimeDb* rtdb = run->GetRuntimeDb();
FairParAsciiFileIo* parIo1 = new FairParAsciiFileIo();
parIo1 -> open(digiParFile.Data(), "in");
//FairParRootFileIo* parIo2 = new FairParRootFileIo();
//parIo2 -> open("param.dummy_proto.root");
// rtdb -> setFirstInput(parIo2);
rtdb -> setSecondInput(parIo1);
// Settings
Bool_t fUseDecoder = kTRUE;
if (dataFile.IsNull() == kTRUE)
fUseDecoder = kFALSE;
Bool_t fUseSeparatedData = kFALSE;
if (dataFile.EndsWith(".txt"))
fUseSeparatedData = kTRUE;
/*
* Unpacking options:
* - SetUseSeparatedData: To be used with 10 CoBo files without merging. Mainly for the ATTPC. Enabled if the input file is a txt.
* - SetPseudoTopologyFrame: Used to force the graw file to have a Topology frame.
* - SetPersistance: Save the unpacked data into the root file.
* - SetMap: Chose the lookup table.
* - SetMapOpt Chose the pad plane geometry. In addition forces the unpacker to use Basic Frames for 1 single file (p-ATTPC case) of Layered
* Frames for Merged Data (10 Cobos merged data).
*/
ATDecoder2Task *fDecoderTask = new ATDecoder2Task();
fDecoderTask -> SetUseSeparatedData(fUseSeparatedData);
if(fUseSeparatedData) fDecoderTask -> SetPseudoTopologyFrame(kTRUE);//! This calls the method 10 times so for less than 10 CoBos ATCore2 must be modified
//fDecoderTask -> SetPositivePolarity(kTRUE);
fDecoderTask -> SetPersistence(kFALSE);
fDecoderTask -> SetMap(scriptdir.Data());
//fDecoderTask -> SetInhibitMaps(inimap,lowgmap,xtalkmap); // TODO: Only implemented for fUseSeparatedData!!!!!!!!!!!!!!!!!!!1
fDecoderTask -> SetMapOpt(0); // ATTPC : 0 - Prototype: 1 |||| Default value = 0
fDecoderTask -> SetNumCobo(9);
fDecoderTask -> SetEventID(0);
/*if (!fUseSeparatedData)
fDecoderTask -> AddData(dataFile);
else {
std::ifstream listFile(dataFile.Data());
TString dataFileWithPath;
Int_t iCobo = 0;
while (dataFileWithPath.ReadLine(listFile)) {
if (dataFileWithPath.Contains(Form("CoBo%i",iCobo)) )
fDecoderTask -> AddData(dataFileWithPath, iCobo);
else{
iCobo++;
fDecoderTask -> AddData(dataFileWithPath, iCobo);
}
}
}*/
fDecoderTask -> AddData("/data/ND/2013/buffer/NSCL_Alpha/run_0100/CoBo0_run_0100_11Dec14_22h03m15s.graw",0);
fDecoderTask -> AddData("/data/ND/2013/buffer/NSCL_Alpha/run_0100/CoBo1_run_0100_11Dec14_22h03m15s.graw",1);
fDecoderTask -> AddData("/data/ND/2013/buffer/NSCL_Alpha/run_0100/CoBo2_run_0100_11Dec14_22h03m15s.graw",2);
fDecoderTask -> AddData("/data/ND/2013/buffer/NSCL_Alpha/run_0100/CoBo2_run_0100_11Dec14_22h03m15s.1.graw",2);
fDecoderTask -> AddData("/data/ND/2013/buffer/NSCL_Alpha/run_0100/CoBo3_run_0100_11Dec14_22h03m16s.graw",3);
fDecoderTask -> AddData("/data/ND/2013/buffer/NSCL_Alpha/run_0100/CoBo4_run_0100_11Dec14_22h03m16s.graw",4);
fDecoderTask -> AddData("/data/ND/2013/buffer/NSCL_Alpha/run_0100/CoBo6_run_0100_11Dec14_22h03m16s.graw",5);
fDecoderTask -> AddData("/data/ND/2013/buffer/NSCL_Alpha/run_0100/CoBo7_run_0100_11Dec14_22h03m16s.graw",6);
fDecoderTask -> AddData("/data/ND/2013/buffer/NSCL_Alpha/run_0100/CoBo7_run_0100_11Dec14_22h03m16s.1.graw",6);
fDecoderTask -> AddData("/data/ND/2013/buffer/NSCL_Alpha/run_0100/CoBo8_run_0100_11Dec14_22h03m16s.graw",7);
fDecoderTask -> AddData("/data/ND/2013/buffer/NSCL_Alpha/run_0100/CoBo9_run_0100_11Dec14_22h03m16s.graw",8);
run -> AddTask(fDecoderTask);
ATPSATask *psaTask = new ATPSATask();
psaTask -> SetPersistence(kTRUE);
psaTask -> SetThreshold(20);
psaTask -> SetPSAMode(1); //NB: 1 is ATTPC - 2 is pATTPC
//psaTask -> SetPeakFinder(); //NB: Use either peak finder of maximum finder but not both at the same time
psaTask -> SetMaxFinder();
psaTask -> SetBaseCorrection(kTRUE); //Directly apply the base line correction to the pulse amplitude to correct for the mesh induction. If false the correction is just saved
psaTask -> SetTimeCorrection(kFALSE); //Interpolation around the maximum of the signal peak
run -> AddTask(psaTask);
ATHoughTask *HoughTask = new ATHoughTask();
HoughTask ->SetPersistence();
HoughTask ->SetLinearHough();
//HoughTask ->SetCircularHough();
HoughTask ->SetHoughThreshold(100.0); // Charge threshold for Hough
HoughTask ->SetHoughDistance(5.0);//This is the distance to reject points from a given linear Hough Space
run -> AddTask(HoughTask);
run -> Init();
//run -> RunOnTBData();
run->Run(0,200);
std::cout << std::endl << std::endl;
std::cout << "Macro finished succesfully." << std::endl << std::endl;
std::cout << "- Output file : " << outputFile << std::endl << std::endl;
// ----- Finish -------------------------------------------------------
timer.Stop();
Double_t rtime = timer.RealTime();
Double_t ctime = timer.CpuTime();
cout << endl << endl;
cout << "Real time " << rtime << " s, CPU time " << ctime << " s" << endl;
cout << endl;
// ------------------------------------------------------------------------
//gApplication->Terminate();
}
void run_digi_Fi4()
{
// ----- Files ---------------------------------------------------------------
TString inFile = "sim2.root";
TString parFile = "par2.root";
TString outFile = "hits2.root";
// ---------------------------------------------------------------------------
// ----- Timer ---------------------------------------------------------------
TStopwatch timer;
timer.Start();
// ---------------------------------------------------------------------------
// ----- Digitization --------------------------------------------------------
FairRunAna* run = new FairRunAna();
run->SetInputFile(inFile);
run->SetOutputFile(outFile);
// ---------------------------------------------------------------------------
// ----- Connect the Digitization Task ---------------------------------------
/*R3BCalifaCrystalCal2Hit* califa_digitizer = new R3BCalifaCrystalCal2Hit();
run->AddTask(califa_digitizer);
// mTOF
R3BmTofDigitizer* mtof_digitizer = new R3BmTofDigitizer();
run->AddTask(mtof_digitizer);
// STaRTrack
R3BSTaRTraHitFinder* tra_digitizer = new R3BSTaRTraHitFinder();
run->AddTask(tra_digitizer);
// MFI
R3BMfiDigitizer* mfi_digitizer = new R3BMfiDigitizer();
run->AddTask(mfi_digitizer);
// PSP
R3BPspDigitizer* psp_digitizer = new R3BPspDigitizer();
run->AddTask(psp_digitizer);*/
// Fi4,5,6
R3BFi4Digitizer* Fi4_digitizer = new R3BFi4Digitizer(0.001,0.01,1);
run->AddTask(Fi4_digitizer);
// sfi
R3BsfiDigitizer* sfi_digitizer = new R3BsfiDigitizer(0.001,0.01);
run->AddTask(sfi_digitizer);
// ---------------------------------------------------------------------------
// ----- Runtime DataBase info -----------------------------------------------
FairRuntimeDb* rtdb = run->GetRuntimeDb();
FairParRootFileIo* parIo1 = new FairParRootFileIo();
parIo1->open(parFile.Data());
rtdb->setFirstInput(parIo1);
rtdb->setOutput(parIo1);
rtdb->saveOutput();
// ---------------------------------------------------------------------------
// ----- Intialise and run ---------------------------------------------------
run->Init();
run->Run();
// ---------------------------------------------------------------------------
// ----- Finish --------------------------------------------------------------
timer.Stop();
Double_t rtime = timer.RealTime();
Double_t ctime = timer.CpuTime();
cout << endl << endl;
cout << "Macro finished succesfully." << endl;
cout << "Output file writen: " << outFile << endl;
cout << "Parameter file writen " << parFile << endl;
cout << "Real time " << rtime << " s, CPU time " << ctime << " s" << endl;
cout << endl;
cout << " Test passed" << endl;
cout << " All ok " << endl;
cout << " Digitization successful." << endl;
// ---------------------------------------------------------------------------
RemoveGeoManager();
}
void run(TString runNumber)
{
TStopwatch timer;
timer.Start();
const Int_t nModules = 200;
TString dirIn1 = "/Volumes/Data/kresan/s438/data/";
TString dirIn2 = "/Volumes/Data/kresan/s438/tcal/";
TString dirOut = "/Volumes/Data/kresan/s438/tcal/";
TString inputFileName1 = dirIn1 + runNumber + "_tcal.root"; // name of input file
TString inputFileName2 = dirIn2 + runNumber + "_tcal_1.root"; // name of input file
TString parFileName = dirIn1 + "params_" + runNumber + "_tcal.root"; // name of parameter file
TString outputFileName = dirOut + runNumber + "_tcal_temp.root"; // name of output file
// Create analysis run -------------------------------------------------------
Int_t nFiles;
if (0 == runNumber.CompareTo("r122"))
{
nFiles = 22;
}
else if (0 == runNumber.CompareTo("r126"))
{
nFiles = 2;
}
// Create analysis run -------------------------------------------------------
FairRunAna* run = new FairRunAna();
run->SetInputFile(inputFileName1.Data());
run->AddFriend(inputFileName2.Data());
for (Int_t i = 1; i < nFiles; i++)
{
inputFileName1 = dirIn1 + runNumber + "_tcal_";
inputFileName1 += i;
inputFileName1 += ".root";
run->AddFile(inputFileName1.Data());
}
run->SetOutputFile(outputFileName.Data());
// ---------------------------------------------------------------------------
// ----- Runtime DataBase info -----------------------------------------------
FairRuntimeDb* rtdb = run->GetRuntimeDb();
FairParRootFileIo* parIo1 = new FairParRootFileIo();
parIo1->open(parFileName);
rtdb->setFirstInput(parIo1);
rtdb->setOutput(parIo1);
// Set the SQL IO as second input
FairParTSQLIo* inp = new FairParTSQLIo();
inp->SetVerbosity(1);
inp->open();
rtdb->setFirstInput(inp);
rtdb->saveOutput();
// ---------------------------------------------------------------------------
// Time calibration ----------------------------------------------------------
R3BLandTcal* landTcal = new R3BLandTcal("LandTcal", 1);
landTcal->SetNofModules(nModules, 40);
run->AddTask(landTcal);
R3BLosTcal* losTcal = new R3BLosTcal("LosTcal", 1);
losTcal->SetNofModules(20);
run->AddTask(losTcal);
// ---------------------------------------------------------------------------
// Initialize ----------------------------------------------------------------
run->Init();
FairLogger::GetLogger()->SetLogScreenLevel("INFO");
// ---------------------------------------------------------------------------
// Run -----------------------------------------------------------------------
run->Run(0, 100000);
// ---------------------------------------------------------------------------
timer.Stop();
Double_t rtime = timer.RealTime();
Double_t ctime = timer.CpuTime();
cout << endl << endl;
cout << "Macro finished succesfully." << endl;
cout << "Output file is " << outputFileName << endl;
cout << "Parameter file is " << parFileName << endl;
cout << "Real time " << rtime << " s, CPU time " << ctime << "s" << endl << endl;
}
void run_digi_tpc(Int_t nEvents = 10, TString mcEngine = "TGeant3"){
// Initialize logger
FairLogger *logger = FairLogger::GetLogger();
logger->SetLogVerbosityLevel("LOW");
logger->SetLogScreenLevel("INFO");
// Input and output file name
std::stringstream inputfile, outputfile, paramfile;
inputfile << "AliceO2_" << mcEngine << ".tpc.mc_" << nEvents << "_event.root";
paramfile << "AliceO2_" << mcEngine << ".tpc.params_" << nEvents << ".root";
outputfile << "AliceO2_" << mcEngine << ".tpc.digi_" << nEvents << "_event.root";
// Setup timer
TStopwatch timer;
// Setup FairRoot analysis manager
FairRunAna * fRun = new FairRunAna();
FairFileSource *fFileSource = new FairFileSource(inputfile.str().c_str());
fRun->SetSource(fFileSource);
fRun->SetOutputFile(outputfile.str().c_str());
// Setup Runtime DB
FairRuntimeDb* rtdb = fRun->GetRuntimeDb();
FairParRootFileIo* parInput1 = new FairParRootFileIo();
parInput1->open(paramfile.str().c_str());
rtdb->setFirstInput(parInput1);
// TGeoManager::Import("geofile_full.root");
// Setup digitizer
AliceO2::ITS::DigitizerTask *digi = new AliceO2::ITS::DigitizerTask;
fRun->AddTask(digi);
AliceO2::TPC::DigitizerTask *digiTPC = new AliceO2::TPC::DigitizerTask;
fRun->AddTask(digiTPC);
fRun->Init();
timer.Start();
fRun->Run();
std::cout << std::endl << std::endl;
// Extract the maximal used memory an add is as Dart measurement
// This line is filtered by CTest and the value send to CDash
FairSystemInfo sysInfo;
Float_t maxMemory=sysInfo.GetMaxMemory();
std::cout << "<DartMeasurement name=\"MaxMemory\" type=\"numeric/double\">";
std::cout << maxMemory;
std::cout << "</DartMeasurement>" << std::endl;
timer.Stop();
Double_t rtime = timer.RealTime();
Double_t ctime = timer.CpuTime();
Float_t cpuUsage=ctime/rtime;
cout << "<DartMeasurement name=\"CpuLoad\" type=\"numeric/double\">";
cout << cpuUsage;
cout << "</DartMeasurement>" << endl;
cout << endl << endl;
std::cout << "Macro finished succesfully." << std::endl;
std::cout << endl << std::endl;
std::cout << "Output file is " << outputfile.str() << std::endl;
//std::cout << "Parameter file is " << parFile << std::endl;
std::cout << "Real time " << rtime << " s, CPU time " << ctime
<< "s" << endl << endl;
}
void run_reco_proto(TString dataFile = "output_proto.root",TString parameterFile = "pATTPC.TRIUMF2015.par"){
// ----- Timer --------------------------------------------------------
TStopwatch timer;
timer.Start();
// ------------------------------------------------------------------------
gSystem->Load("libXMLParser.so");
TString scriptfile = "LookupProto20150331.xml";
TString protomapfile = "proto.map";
TString dir = getenv("VMCWORKDIR");
TString scriptdir = dir + "/scripts/"+ scriptfile;
TString protomapdir = dir + "/scripts/"+ protomapfile;
TString geo = "proto_geo_hires.root";
TString paraDir = dir + "/parameters/";
FairLogger *logger = FairLogger::GetLogger();
logger -> SetLogFileName("ATTPC_RecoLog.log");
logger -> SetLogToFile(kTRUE);
logger -> SetLogToScreen(kTRUE);
logger -> SetLogVerbosityLevel("MEDIUM");
FairRunAna* run = new FairRunAna();
run -> SetInputFile(dataFile.Data());
run -> SetOutputFile("output_proto_reco.root");
//run -> SetGeomFile("../geometry/ATTPC_Proto_v1.0.root");
TString paramterFileWithPath = paraDir + parameterFile;
FairRuntimeDb* rtdb = run->GetRuntimeDb();
FairParAsciiFileIo* parIo1 = new FairParAsciiFileIo();
parIo1 -> open(paramterFileWithPath.Data(), "in");
//FairParRootFileIo* parIo2 = new FairParRootFileIo();
//parIo2 -> open("param.dummy_proto.root");
// rtdb -> setFirstInput(parIo2);
rtdb -> setSecondInput(parIo1);
ATPhiRecoTask *phirecoTask = new ATPhiRecoTask();
phirecoTask -> SetPersistence();
run -> AddTask(phirecoTask);
ATHoughTask *HoughTask = new ATHoughTask();
HoughTask->SetPhiReco();
HoughTask->SetPersistence();
HoughTask->SetLinearHough();
HoughTask->SetRadiusThreshold(3.0); // Truncate Hough Space Calculation
//HoughTask ->SetCircularHough();
run ->AddTask(HoughTask);
run->Init();
run->Run(0,2000000);
//run -> RunOnTBData();
// ----- Finish -------------------------------------------------------
timer.Stop();
Double_t rtime = timer.RealTime();
Double_t ctime = timer.CpuTime();
cout << endl << endl;
cout << "Macro finished succesfully." << endl;
cout << "Real time " << rtime << " s, CPU time " << ctime << " s" << endl;
cout << endl;
// ------------------------------------------------------------------------
}